Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq2239 86.0 5e-12 >seq2239 Length=279090 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCG 20460 ||||| ||||||| || ||| || ||||| || || || || ||| ||| |||| Sbjct 219089 ATGGCACTGCCTCCCTGCCATGCCCTTTGCCAGTTCTATGTGGCGAATGGTGAGCTGTCC 219148 Query 20461 TGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGT 20520 || || |||| || | || | || ||||| ||||| || |||||||| ||||| || Sbjct 219149 TGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGGGTACCTTTCAACATTGCCAGC 219208 Query 20521 TATGCGCTGCTTACGTATATGATTGCACAT 20550 || || ||||| || | |||||||||||| Sbjct 219209 TACGCCCTGCTCACCTGCATGATTGCACAT 219238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398864395076830