Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1287 100 3e-16 >seq1287 Length=728452 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||| ||||| || ||||| || | || ||||||||||||||||| | Sbjct 541987 CCTCATCTCTGCTAATCAGTTCATTGGAAAAGGTGAGGCCAGGCATCAATCCTCGTTTCT 541928 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| | ||| || || || ||||| | Sbjct 541927 TGAGCCAGAATATCGATGCAAAGGAACCAGAAAAGAAGACTCCTTCTACAGCTGCAAAGG 541868 Query 14346 CTA 14348 ||| Sbjct 541867 CTA 541865 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 || || ||| |||| || | |||| ||| || | | | || || || ||||| | Sbjct 543579 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTGGACATCACTCCCATCCTC 543520 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||| Sbjct 543519 TGATACTCGCCCACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCC 543460 Query 13976 ATAAAATCAAATGGATTT 13993 ||||| |||||||||||| Sbjct 543459 ATAAAGTCAAATGGATTT 543442 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| || |||||||| | ||| ||||||||||| |||||||||||||| || ||||| Sbjct 538451 AATGTAAGTGTCAATAAGGAGGCTGTACATTTCAGAATGTATGTTTTCCATGGCAATCTG 538392 Query 14533 AAAACCATAAAAACATCTAGCTTC 14556 ||| ||||| ||||| | |||||| Sbjct 538391 AAAGCCATAGAAACAGCGAGCTTC 538368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481949509851920