Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq58 114 1e-20 seq2502 100 3e-16 seq875 96.9 3e-15 seq3163 87.8 2e-12 seq2217 84.2 2e-11 >seq58 Length=3827145 Score = 114 bits (126), Expect = 1e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 ||||||| ||| || |||||||| || ||||| || || || ||||| || || |||| Sbjct 3728848 CCACCTCATCTGTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATCG 3728789 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | |||| || |||||| || || ||||| || ||||| ||||||||||||||||| | Sbjct 3728788 TTCCCAGGTTCTGCTGGTTACTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGG 3728729 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 | || ||||| ||| ||||| ||||| || Sbjct 3728728 TCCCTGTCTCTGTCTGAGACTCAATGATGGC 3728698 >seq2502 Length=682766 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || || |||||| | || || || || Sbjct 414030 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACAATCACCCTTGAAGTAGAGCCCAGT 414089 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||||||| | || || |||||| Sbjct 414090 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 414149 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | | || || ||||| |||||| ||||||| | | | || || || || || Sbjct 414150 CAGAGGTTGATTTTTGCTGGGAAACAGCTGGAAGA-TGGACGCACCCTGTCTGACTACAA 414208 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| || |||||||| ||||| || ||||| || | ||||||| ||| Sbjct 414209 CATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCTTGAGGGGAGGT 414257 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || ||||| || | || || ||||| |||||| | || || || || Sbjct 412570 ATGCAGATCTTTGTAAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTGGAGCCCAGT 412629 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | |||||||||||| | || || ||||| Sbjct 412630 GACACCATCGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGCATCCCACCTGACCA 412688 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || || ||||| |||||| ||||||| | ||| || || || || Sbjct 412689 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGTCGGACCTTGTCTGACTACAA 412748 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || |||||||| ||||| || |||| ||| | ||||| || || Sbjct 412749 CATCCAGAAAGAATCCACTCTGCACTTGGTTCTTCGTCTGAGAGGTGG 412796 >seq875 Length=1260434 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || ||||| || || | || || | |||||||| Sbjct 610513 AAGATGCAGATTTTCGTGAAGACCCTCACAGGAAAGACCGTTGCCCTCAAGGTTGAACCT 610454 Query 31250 TCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | |||| || || | |||| | || |||||||| | || || || Sbjct 610453 TCGGACACCATAGAAAATGTAAAGGCCGAGA-TCCAGGGTAAGGAAGGGATTCCTCCTGA 610395 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||| | || | || |||||| | || ||||||| ||| || ||||| Sbjct 610394 TTAGCAGAGGCTGCTGTTTGCTGGCCAGCAACTGGAAGATGGACGGACCTTGTCAGATTA 610335 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||||||| || |||||||||||||| || | ||||| Sbjct 610334 TAACATTCAAAAGGAGTCGACTCTTCATCTTGTGTTGAGACT 610293 >seq3163 Length=297541 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||||||||| ||||| || || ||||| || || ||||| | || || ||| Sbjct 215129 TCAAA-ATGCAAATTTTTGTAAAAACCCTAACAGGAAAGACCATCACTCTGGAGGTGGAA 215071 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || || | | || | || ||| | || ||| || |||||| | || || Sbjct 215070 CCCAGTGATACCATTGAGAATGTGAAAGCCAAGATTCAGGATAAAGAAGGCATCCCTCCT 215011 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| |||| || ||| | || Sbjct 215010 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGAC 214951 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || || || ||||| ||||| || ||| | ||||||||||| Sbjct 214950 TACAACATCCAGAAGGAGTCAACTCTGCATCTTGTTCTTCGTCTGAGGGGCGG 214898 >seq2217 Length=590369 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 31195 GCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGA 31254 ||| || || || ||||| || |||||||| || ||||| |||| || || || || Sbjct 77282 GCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACTCTCGAGGTCGAGCCCAGTGA 77223 Query 31255 CAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCA 31314 || |||||| |||||| | ||| |||||||| ||| | || || |||||||| Sbjct 77222 CATCATCGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAGCA 77163 Query 31315 GCGTCTAATATTCGCTGGCAAACAGTTGG 31343 |||||| || || || |||||||| ||| Sbjct 77162 GCGTCTGATTTTTGCCAGCAAACAGCTGG 77134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445400347776480