Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq58 131 2e-25 seq1775 111 2e-19 seq1287 102 1e-16 seq51 89.7 6e-13 >seq58 Length=3827145 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| |||||||| || || || ||||||||||| | Sbjct 3738281 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTATATGTTGCTCGTATACGGTTCAATG 3738222 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| |||||||||||||| ||||| ||||| || || | | |||| Sbjct 3738221 GACTCATTATTCCCCAGTATTTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGTAAA 3738162 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | |||||| Sbjct 3738161 CTGTTTCTTACACCGTA 3738145 Score = 96.9 bits (106), Expect = 4e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || || | || |||||| || || | ||||| | Sbjct 3732401 CATAGGTTTCATATGGACCATGCTCCTTGGCCAATTCACAACTGGCTTCCAGGGCACCAT 3732342 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 |||||||||||||||| || | |||||| | || || || || || ||||| |||| Sbjct 3732341 AATAAATGGTTTCAAAAATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGAT 3732282 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62803 | | | || ||||| || || || | ||||| || ||||| || ||||| | ||| Sbjct 3732281 ACCTCATCAGGATAAAAGCATCAGCCAGACCTTGCACCCCAATTCCAATAGGCCGATG 3732224 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | || || || | | | Sbjct 3727609 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAACAGGTCCCGGGCACG 3727550 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || || ||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 3727549 CTGTTCTTCCTTGCCTGTGTTCTTCTTTAAATCAAGGAACTCGAAGATGTCTAAATGCCA 3727490 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 3727489 AGGCTCCAGGTAAATAGC 3727472 >seq1775 Length=929584 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| ||| || |||||||||| || ||||| |||| || ||| Sbjct 245683 GTTACTTTCTATGATGTATATATTATTCTACAAGCTTTTATACTGACTGCTGCGGTATTT 245624 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| ||| |||||||||||| ||||||||||| || ||| ||| | |||| Sbjct 245623 CTTGGTTTGACTGCATATACTCTACAATCTAAGAGAGATTTTAGCAAATTTGGAGCAGG 245565 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 188170 CGTGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGC 188229 ||| |||||| |||||||| ||||||||||||| ||||| ||||| ||||||||||||| Sbjct 258565 CGTCCTCCTCGATCGAGGATGACTTCAACTATGGCAGCTGCGTGGCCTCTGCCAGCGTGC 258506 Query 188230 ACATACGAATGG 188241 |||| || |||| Sbjct 258505 ACATCCGGATGG 258494 >seq1287 Length=728452 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| ||||| || || | || || |||||||| ||||| |||||||| ||||| Sbjct 538457 ATCTTTAATGTAAGTGTCAATAAGGAGGCTGTACATTTCAGAATGTATGTTTTCCATGGC 538398 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 |||||||| || |||||||| | ||| || || |||||||||||| Sbjct 538397 AATCTGAAAGCCATAGAAACAGCGAGCTTCCGTGATCTGCACTTCT 538352 >seq51 Length=3716683 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || |||| || || | ||| || || || |||||||| ||||| || || | ||| || Sbjct 836208 TCATCTCGGCTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 836149 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| || || ||||| ||||||||||| Sbjct 836148 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCCTCTACAGCAGCAAAGGC 836090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629300409532320