Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1287 118 1e-21 seq58 107 2e-18 seq51 105 6e-18 >seq1287 Length=728452 Score = 118 bits (130), Expect = 1e-21 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| ||||| || | || ||||||||||||||||| || Sbjct 541985 TCATCTCTGCTAATCAGTTCATTGGAAAAGGTGAGGCCAGGCATCAATCCTCGTTTCTTG 541926 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| | ||| || ||||||||||| ||| Sbjct 541925 AGCCAGAATATCGATGCAAAGGAACCAGAAAAGAAGACTCCTTCTACAGCTGCAAAGGCT 541866 Query 11774 ACTAC 11778 || || Sbjct 541865 ACGAC 541861 >seq58 Length=3827145 Score = 107 bits (118), Expect = 2e-18 Identities = 117/154 (76%), Gaps = 5/154 (3%) Strand=Plus/Minus Query 37116 TCTCAATAGGTGTGGATTTACA----ACCTGAAAATCTCCAGATAATACTCTTCTTGTAT 37171 ||||| ||||| ||| | | || |||||||| ||||| || || ||||| | || | Sbjct 3738306 TCTCAGTAGGTCTGGCTGT-CATCTCACCTGAAATTCTCCTGACAAGACTCTGCGAGTGT 3738248 Query 37172 ATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATG 37231 |||| ||||| ||||| |||||||||||||||||||| | | |||||||| || || | Sbjct 3738247 ATATGTTGCTCGTATACGGTTCAATGGACTCATTATTCCCCAGTATTTGAGCAGTTGAAG 3738188 Query 37232 CAGTAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265 |||||||||| || || | || | || ||||| Sbjct 3738187 CAGTAGGCATCGGGGCAAGAAGTAAACTGTTTCT 3738154 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/159 (73%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| || || || ||||||||||| ||||| | || |||| | | | |||| || Sbjct 3741012 TCCAGCCATAGAAGTGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 3740953 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACA-- 36980 ||| || || |||||||| || || || ||||| || ||||||| ||| | |||| Sbjct 3740952 TCAGAGACTGGCTTTGATCAATGAAGGCCCCTCTTTCAGCTGCCA--TCTTGAGTACAGT 3740895 Query 36981 TTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 ||||||||| || ||||| || || ||||| | ||| || Sbjct 3740894 TTTTTGAGAGATTTCCCACACTGTCTTATACAGTTGCTT 3740856 >seq51 Length=3716683 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| |||| || || |||||||| || || || | ||| ||||| | |||| || | Sbjct 836210 CTTCATCTCGGCTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 836151 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || ||||| ||||| || ||||| ||||| ||||| | Sbjct 836150 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCCTCTACAGCAGCAAAGG 836091 Query 11772 CTACTACTCTTTCTCC 11787 |||| | ||||| || Sbjct 836090 CTACGATCCTTTCCCC 836075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468140059147360