Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1775 152 7e-32 seq58 134 2e-26 seq1287 111 2e-19 >seq1775 Length=929584 Score = 152 bits (168), Expect = 7e-32 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | |||| || | | ||||| |||| |||||||||||||||||||||| Sbjct 240832 TTTTTATTAACTGCTTCTAATAAACGCAACAGGTGCAGGAACAGATTGATGATATCCAAG 240891 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 || | | || | || || | ||| |||||||| || ||| |||| || |||||||| Sbjct 240892 TAAAGGCTAATGGCAGCCAATATATAATCTTCAGGTGACAGCCTATGCATCAGTGAGTGA 240951 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||| ||||| | |||||| || ||||| || ||||||||| Sbjct 240952 GTGTCATAGATGATGAATCCACAGAAAAGAAGGGCTCCCCCAGCAGCCAAAACCAGCTCC 241011 Query 9411 ACTGTTTCACTTTGCACAAATA 9432 | ||| ||||| | | ||||| Sbjct 241012 AGTGTCTCACTATATAAAAATA 241033 Score = 134 bits (148), Expect = 2e-26 Identities = 101/119 (85%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| || ||||||||||| |||||||||||||||||||||| | ||||| Sbjct 245565 CCTGCTCCAAATTTGCTAAAATCTCTCTTAGATTGTAGAGTATATGCAGTCAAACCAAGA 245624 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || || |||| |||||| || |||||||| | || | || ||||||||||||||||| Sbjct 245625 AATACCGCAGCAGTCAGTATAAAAGCTTGTAGAATAATATATACATCATAGAAAGTAAC 245683 Score = 107 bits (118), Expect = 3e-18 Identities = 88/104 (85%), Gaps = 5/104 (5%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || |||||||| |||||||| ||||| ||||||||||||||||||| ||||||| Sbjct 258494 CCATCCGGATGTGCACGCTGGCAGAGGCCACGCAGCTGCCATAGTTGAAGTCATCCTCGA 258553 Query 9907 TGGAGGAGCACGCGTAG-AGG---CTCGGCATGGCCATGGCGGC 9946 | |||||| ||| |||| ||| || ||| ||||||||||||| Sbjct 258554 TCGAGGAGGACGGGTAGCAGGACTCTAGGC-TGGCCATGGCGGC 258596 >seq58 Length=3827145 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| |||||||| || || || ||||||||||| | Sbjct 3738281 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTATATGTTGCTCGTATACGGTTCAATG 3738222 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| |||||||||||||| ||||| ||||| || || | | |||| Sbjct 3738221 GACTCATTATTCCCCAGTATTTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGTAAA 3738162 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | |||||| Sbjct 3738161 CTGTTTCTTACACCGTA 3738145 Score = 105 bits (116), Expect = 9e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || |||| | Sbjct 3714404 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAGGA 3714345 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| |||| || |||| |||||||| Sbjct 3714344 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTGTCCA 3714285 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| |||| | |||||||| || ||||| Sbjct 3714284 GTTCCACAGTGGTGACCCCACTATACAAGCCTTGGATCACTTTCAT 3714239 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | || | || | || | Sbjct 3727609 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAACAGGTCCCGGGCACG 3727550 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || || ||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 3727549 CTGTTCTTCCTTGCCTGTGTTCTTCTTTAAATCAAGGAACTCGAAGATGTCTAAATGCCA 3727490 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 3727489 AGGCTCCAGGTAAATAGC 3727472 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| || | || || || | ||||||||| || || | ||||| | Sbjct 3732401 CATAGGTTTCATATGGACCATGCTCCTTGGCCAATTCACAACTGGCTTCCAGGGCACCAT 3732342 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| || || | |||||| | || || || | || ||||| |||| Sbjct 3732341 AATAAATGGTTTCAAAAATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGAT 3732282 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 65596 | | | || ||||| || || || | ||||| || ||||| || ||||| | ||| Sbjct 3732281 ACCTCATCAGGATAAAAGCATCAGCCAGACCTTGCACCCCAATTCCAATAGGCCGATG 3732224 >seq1287 Length=728452 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| | || || || | Sbjct 541987 CCTCATCTCTGCTAATCAGTTCATTGGAAAAGGTGAGGCCAGGCATCAATCCTCGTTTCT 541928 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||||||||| | ||||||||| || ||||||| Sbjct 541927 TGAGCCAGAATATCGATGCAAAGGAACCAGAAAAGAAGACTCCTTCTACAGCTGCAAAGG 541868 Query 36300 C 36300 | Sbjct 541867 C 541867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657632324950960