Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq2239 140 3e-28 >seq2239 Length=279090 Score = 140 bits (154), Expect = 3e-28 Identities = 136/175 (78%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| || || |||| | || || |||||||||||||| ||||| || | Sbjct 219251 TCAGGCCCGTGATATGTGCAATCATGCAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAAG 219192 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | ||||| ||||||||||| | ||||||||||||||||||||||||||||| || | Sbjct 219191 GTACCCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCG 219132 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 |||| || ||||| || | | || || ||||| || |||||| | | ||||| Sbjct 219131 CCACATAGAACTGGCAAAGGGCATGGCAGGGAGGCAGTGCCATCTGAGGAAGGTC 219077 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 21439 CCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTA 21498 || |||||||||||||||||||||||| ||| ||| |||| ||||| | ||||| || | Sbjct 209085 CCTTGATAAACCACAGCAACTCCTCCAAGACACCCTTCCAGAACACACGCTTGGTTGTCA 209026 Query 21499 ACAGAGGAAACTCGTC 21514 |||||||||||| || Sbjct 209025 GCAGAGGAAACTCTTC 209010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427433503017120