Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq1287 87.8 1e-12 >seq1287 Length=728452 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 ||| || | |||||||| ||||| ||||| ||| | |||||||| || ||||| | ||| Sbjct 541858 CGTGTCGTAGCCTTTGCAGCTGTAGAAGGAGTCTTCTTTTCTGGTTCCTTTGCATCGATA 541917 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 |||||||| |||||||| | ||||| || | | |||||||| || |||||||| Sbjct 541918 TTCTGGCTCAAGAAACGAGGATTGATGCCTGGCCTCACCTTTTCCAATGAACTGATTAGC 541977 Query 22861 CGTGACGA 22868 | || || Sbjct 541978 AGAGATGA 541985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355948383126682