Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq58 122 1e-22 seq1287 120 4e-22 >seq58 Length=3827145 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| |||||||| || || || ||||| ||||| | Sbjct 3738281 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTATATGTTGCTCGTATACGGTTCAATG 3738222 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| |||||||||||||| || || ||||| || || | | |||| Sbjct 3738221 GACTCATTATTCCCCAGTATTTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGTAAA 3738162 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | |||||| Sbjct 3738161 CTGTTTCTTACACCGTA 3738145 Score = 96.9 bits (106), Expect = 5e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| || || | || | ||| ||||||||||| || || | || || ||| Sbjct 3732399 TAGGTTTCATATGGACCATGCTCCTTGGCCAATTCACAACTGGCTTCCAGGGCACCATAA 3732340 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||||||||| ||||| | |||||| | || || ||| | || ||||| ||||| Sbjct 3732339 TAAATGGTTTCAAAAATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 3732280 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475 | | || ||||| || || || | ||||| || ||||| || ||||| | ||| Sbjct 3732279 CTCATCAGGATAAAAGCATCAGCCAGACCTTGCACCCCAATTCCAATAGGCCGATG 3732224 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| ||||||||||| || | || || || | || | || Sbjct 3727605 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAACAGGTCCCGGGCACGCTGT 3727546 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || || ||||| ||||| || | ||| |||||| | | || || ||||||| || Sbjct 3727545 TCTTCCTTGCCTGTGTTCTTCTTTAAATCAAGGAACTCGAAGATGTCTAAATGCCAAGGC 3727486 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 3727485 TCCAGGTAAATAGC 3727472 >seq1287 Length=728452 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| |||||||| ||||| || ||||| | || || || | Sbjct 541987 CCTCATCTCTGCTAATCAGTTCATTGGAAAAGGTGAGGCCAGGCATCAATCCTCGTTTCT 541928 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || ||||||||||||| ||||||||| || ||||||| Sbjct 541927 TGAGCCAGAATATCGATGCAAAGGAACCAGAAAAGAAGACTCCTTCTACAGCTGCAAAGG 541868 Query 50102 CAAC 50105 | || Sbjct 541867 CTAC 541864 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| ||||| || || | || || |||||||| ||||| |||||||| ||||| Sbjct 538457 ATCTTTAATGTAAGTGTCAATAAGGAGGCTGTACATTTCAGAATGTATGTTTTCCATGGC 538398 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 |||||||| || |||||||| | ||| || || |||||||||||| Sbjct 538397 AATCTGAAAGCCATAGAAACAGCGAGCTTCCGTGATCTGCACTTCT 538352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717678975618160