Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2502 93.3 3e-14 seq3163 84.2 2e-11 >seq2502 Length=682766 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | ||| || || || ||||| ||||| || |||||||| || Sbjct 412796 CCACCTCTCAGACGAAGAACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 412737 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||| | ||||| ||||| | ||||| | || ||||| ||| Sbjct 412736 AAGGTCCGACCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGG 412677 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| || ||||| ||| ||| | || ||||| || || || || Sbjct 412676 ATGCCTTCCTTGTCTTGGATCTTTGC-CTTGACATTCTCGATGGTGTCACTGGGCTCCAC 412618 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||||||||| || | ||||||||||| || ||||| Sbjct 412617 CTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTTACAAAGATCTGCAT 412570 >seq3163 Length=297541 Score = 84.2 bits (92), Expect = 2e-11 Identities = 169/248 (68%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 ||| || |||| | | ||| | ||| || || || || || || |||||||| || Sbjct 214897 GCCGCCCCTCAGACGAAGAACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGA 214956 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 ||| | | | || || | || ||||| || | || | | || ||||| || Sbjct 214957 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGG 215016 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || ||| ||| || ||| | || |||||||| || ||| || Sbjct 215017 GATGCCTTCTTTATCCTGAATCTTGGCTTTCACATTCTCAATGGTATCACTGGGTTCCAC 215076 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAA 15375 || | || ||||| || ||||| || |||||||||||||||||||| |||| | ||| Sbjct 215077 CTCCAGAGTGATGGTCTTTCCTGTTAGGGTTTTTACAAAAATTTGCAT-TTTG-ACCTAA 215134 Query 15376 AATTTTAA 15383 ||||| || Sbjct 215135 AATTTAAA 215142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361889222808054