Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3163 84.2 2e-11 >seq3163 Length=297541 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| || |||||||| || || ||||| || | | || | | ||||||||||| Sbjct 214922 TGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCCAGCTGC 214981 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | || || |||||||| || || | ||| ||||| || ||| || Sbjct 214982 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGAATCTTG 215041 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | | | ||||| | || ||| || | || ||||| || |||||| Sbjct 215042 GCTTTCACATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTCTTTCCTGTT 215101 Query 19019 AAAGTTTTGACAAAAATTTGCATTTT 19044 | ||||| ||||||||||||||||| Sbjct 215102 AGGGTTTTTACAAAAATTTGCATTTT 215127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414240874101436