Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3163 95.1 8e-15 seq1368 91.5 9e-14 >seq3163 Length=297541 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 ||||| || | || | || | ||||| || ||||| || || || ||||| ||||| Sbjct 214898 CCGCCCCTCAGACGAAGAACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAA 214957 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | || | || |||| ||||| || ||| || | | |||||||| | || Sbjct 214958 AGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 215017 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 ||||||||||| || |||| ||| || | | ||| || || |||||| || Sbjct 215018 ATGCCTTCTTTATCCTGAATCTTGGCTTTCACATTCTCAATGGTATCACTGGGTTCCACC 215077 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||||||| || || ||||| || || |||||||| ||||||||||| || Sbjct 215078 TCCAGAGTGATGGTCTTTCCTGTTAGGGTTTTTACAAAAATTTGCATTTT 215127 >seq1368 Length=2199528 Score = 91.5 bits (100), Expect = 9e-14 Identities = 148/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||||| || |||||||| || || ||||| ||||| | | || | || |||| || Sbjct 788886 ATGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCCTCCAGCTG 788827 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC-- 33283 ||| || ||| || | | |||||||| | || ||||||||||| || |||| Sbjct 788826 CTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGAATCTT 788767 Query 33284 GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCC 33343 ||| ||| || | | ||| || || |||||| || |||||||| || || ||||| Sbjct 788766 GCC--TTTCACATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTCTTTCCT 788709 Query 33344 GTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || | |||||||| |||||||| ||||| Sbjct 788708 GTTACGGTTTTTACAAAAATTTG--TGTTT 788681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318522372109212