Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq51 89.7 4e-13 >seq51 Length=3716683 Score = 89.7 bits (98), Expect = 4e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| |||||| || || |||||||| |||||||| |||||||||||| Sbjct 849225 TGATACTCTGAAACTCGTTTTTCGAAGAAATTTGTTTTCCCTTCTAAAGAAATATTTTCC 849166 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| || ||||||| Sbjct 849165 ATAAAATCAAAGGGATTTT 849147 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 ||||||||| || || || || || || || || || || |||||||| |||| || | Sbjct 836210 CTTCATCTCGGCTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 836151 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || || || || || || ||||| | Sbjct 836150 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCCTCTACAGCAGCAAAGG 836091 Query 13293 CTATCAACCTTTCACC 13308 ||| | |||||| || Sbjct 836090 CTACGATCCTTTCCCC 836075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430637335826988