Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3163 187 6e-42 seq1368 176 1e-38 seq2502 159 8e-34 seq875 132 1e-25 seq350 125 2e-23 seq3107 98.7 2e-15 seq692 84.2 5e-11 >seq3163 Length=297541 Score = 187 bits (206), Expect = 6e-42 Identities = 180/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 104334 CCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATA 104393 |||||| || | ||| || ||||| | || || || ||||| || || |||||||| | Sbjct 214901 CCCCTC--AGACGAAGAACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAAA 214958 Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453 |||| | || || || || || || || ||||| || |||||||| || |||||||| | Sbjct 214959 GAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGA 215018 Query 104454 TTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCT 104513 | |||||||||||||||||||| ||||| ||||| || | |||||| || ||||| |||| Sbjct 215019 TGCCTTCTTTATCCTGAATCTTGGCTTTCACATTCTCAATGGTATCACTGGGTTCCACCT 215078 Query 104514 CTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || ||||| || || || ||||||||||| || ||||||||| Sbjct 215079 CCAGAGTGATGGTCTTTCCTGTTAGGGTTTTTACAAAAATTTGCATTTTG 215128 >seq1368 Length=2199528 Score = 176 bits (194), Expect = 1e-38 Identities = 174/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 104339 CTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTT 104398 || || | ||| || ||||| | || || |||||||| || || |||||||| ||||| Sbjct 788903 CTCAGACAAAGAACAAGATGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTG 788844 Query 104399 CTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 | ||| || || || || || || ||||| || |||||||| || |||||||| || ||| Sbjct 788843 CGACCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCT 788784 Query 104459 TCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGT 104518 ||||||||||||||||| |||| ||||| || | |||||| || ||||| ||||| || Sbjct 788783 TCTTTATCCTGAATCTTGCCTTTCACATTCTCAATGGTATCACTGGGTTCCACCTCCAGA 788724 Query 104519 GTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || ||||| || || | ||||||||||| || || ||||| Sbjct 788723 GTGATGGTCTTTCCTGTTACGGTTTTTACAAAAATTTGTGTTTTG 788679 >seq2502 Length=682766 Score = 159 bits (176), Expect = 8e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | ||| || | || | || ||||||||||| || || |||||| Sbjct 412799 ATCCCACCTCTCAGACGAAGAACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCA 412740 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | ||| ||||| || ||||| |||||||| || | |||||| || ||||| Sbjct 412739 GACAAGGTCCGACCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGT 412680 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || |||||||| || ||||| || | ||| || || || || Sbjct 412679 GGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCC 412620 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || || || ||||| || | ||||||||||| ||||||||| Sbjct 412619 ACCTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTTACAAAGATCTGCATT 412569 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || |||||||| || || | || ||||| || ||||| ||| Sbjct 414226 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCA 414167 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | |||||| || |||||||| || ||||| || || || ||||| || || Sbjct 414166 GCAAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTG 414107 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || ||||| || || || || ||||| || || || || Sbjct 414106 ACGTTCTCGATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTCTTCCCCGTCAGGGTC 414047 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 414046 TTCACGAAGATCTGCAT 414030 >seq875 Length=1260434 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || ||||| ||||| || || | || | || ||||| Sbjct 610302 ACAAGATGAAGAGTCGACTCCTTTTGAATGTTATAATCTGACAAGGTCCGTCCATCTTCC 610361 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| | |||||||| | |||||||| | ||||||||| || ||||| ||| |||| Sbjct 610362 AGTTGCTGGCCAGCAAACAGCAGCCTCTGCTAATCAGGAGGAATCCCTTCCTTACCCTGG 610421 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 |||| || ||||||||||||| ||| || |||||| |||| || | || ||||| Sbjct 610422 ATCTCGGCCTTTACATTTTCTATGGTGTCCGAAGGTTCAACCTTGAGGGCAACGGTCTTT 610481 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || || || |||||||| ||| Sbjct 610482 CCTGTGAGGGTCTTCACGAAAATCTGCATCTTG 610514 >seq350 Length=1614380 Score = 125 bits (138), Expect = 2e-23 Identities = 168/231 (73%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 104334 CCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATA 104393 |||||| || | ||| || ||||| || || ||| || | || || |||||||| Sbjct 327591 CCCCTC--AGACGAAGAACAAGATGCCGAGTCGAGTCTCTCCGGATGTTGTAGTCAGAGT 327648 Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453 | | ||| || || || || || || ||||| || ||||| || || |||||||| Sbjct 327649 GTG----ACCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTGTGCTGGTCAGGAGGGG 327704 Query 104454 TTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCT 104513 | |||||||||||||||||||| ||||| ||||| || | |||||| || |||| |||| Sbjct 327705 TGCCTTCTTTATCCTGAATCTTGGCTTTCACATTCTCGATGGTATCACTGGGTTTCACCT 327764 Query 104514 CTAGTGTAATAGTCTTACCAG-TAAGTGTTTTTACAAATATCTGCATTTTG 104563 | | || | ||| | || | || | |||||||| || || ||||||||| Sbjct 327765 CCACAGTGACGGTCCTTCCTGTTAGGGGTTTTTACGAAAATTTGCATTTTG 327815 >seq3107 Length=408548 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | | | ||||||||| | |||||| | || || | || || |||||| | Sbjct 376513 TGGTGGTACTTTGTATCTAAAGGAGTTGAATACTTGGACACAGTTTTTTTTATCCTAAGG 376454 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | ||| || || ||||||||||| | ||| |||||||| ||| Sbjct 376453 AAGAAAAACAACCAAGTCTCTTTCCTTCACGTATATCATCACTGTACAATGTTTACATTG 376394 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 | ||||| || ||||| ||| | || || || |||| Sbjct 376393 TGGTGGATTGGAATTAAGTGGGTGGCTGGGGGGCAAG 376357 >seq692 Length=1962805 Score = 84.2 bits (92), Expect = 5e-11 Identities = 138/195 (71%), Gaps = 7/195 (4%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||| |||| || |||||||| | || | || |||| ||| || |||||||| | Sbjct 1770774 CTTTC-GAATGTTGTAGTCAGACAAGGTACGTCCATCTTTCAGTCACTTGCCAGCAAAGA 1770832 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | | ||| ||||| ||| ||||| | |||||||| ||||| || |||| ||||| Sbjct 1770833 T----CCCTGCAGATCAAGAGAAATTCCCCCCTTATCCTGGATCTTAGCCTTTAGATTTT 1770888 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACC-AGTAAGTGTTTTTACA 104548 | ||||| ||| |||| || || ||| |||| || | |||| ||||||||| Sbjct 1770889 CACTTGTATCTGAGCATTCAACCTTGAGAGTGATAATCTTCCCCATTAAG-GTTTTTACA 1770947 Query 104549 AATATCTGCATTTTG 104563 || ||| |||| ||| Sbjct 1770948 AAAATCCGCATGTTG 1770962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150429262929352