Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq57697 84.2 2e-11 >seq57697 Length=1582 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/108 (79%), Gaps = 7/108 (6%) Strand=Plus/Plus Query 113275 GTCGTGCCCGACTCTGTGCGAC---AAAGACAGAAGCTCACCAAACTCTTCGTCTC-TG- 113329 |||||| ||||||||||||||| | |||||| ||| ||||| ||| || || || Sbjct 512 GTCGTGTCCGACTCTGTGCGACCCCATAGACAGCAGCCCACCAGGCTCCCCGGTTCCTGG 571 Query 113330 --TTCTCCAAGCAAGAACACTGGAGTGATTTGCCATTTCCGTCTCCAA 113375 ||||||| ||||||||||||||||| |||||||| | ||||||| Sbjct 572 GATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTCCTTTCTCCAA 619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447382718565280