Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq2239 89.7 3e-13 >seq2239 Length=279090 Score = 89.7 bits (98), Expect = 3e-13 Identities = 111/148 (75%), Gaps = 3/148 (2%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||| | ||||| || ||||||||| ||||| || |||||||| | |||||| Sbjct 219234 GCAATCATGCAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGTACCCCCAGGCCCATG 219175 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTC-GTCGCTCACGTAAAACTGAC 25624 || || ||||||||||| ||||| || || ||||| | |||| ||| || ||||| | Sbjct 219174 TCTCCT-GACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCGC-CACATAGAACTGGC 219117 Query 25625 ACATGGTGTAGCACGGAGGAAGAGCTAT 25652 | | || | ||| ||||| || || || Sbjct 219116 AAAGGGCATGGCAGGGAGGCAGTGCCAT 219089 Score = 87.8 bits (96), Expect = 1e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 25772 TCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGT 25831 |||| || | || ||||| || |||| ||||||||| || || || || || |||| | Sbjct 215774 TCATATCTTTATATTCTGCACCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAAT 215715 Query 25832 CTCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCG 25890 |||| ||||| | | || | || ||| | ||||||||||||| || |||| || Sbjct 215714 CTCCTTCTTCTCGG-GCAGAGAATCCCAGGCTGTCCAAAAAGTCTCGAGATGCATTAGCA 215656 Query 25891 TCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||||||| || ||||| || || ||||||| || ||||| || Sbjct 215655 TCCCAGATCTTCACTCCCTTTGAAGACAGTTCTTTGGCATTGGTGGATCC 215606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339865270318662