Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq899 96.9 4e-15 >seq899 Length=1738619 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/205 (71%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 164500 TTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACA 164559 ||||| || |||||| | ||||| || | ||| |||| || || || |||||||| || Sbjct 1309425 TTAGGTTGCAAACATGTTAAAGGCATCCTGTTATATGGGCCCCCGGGATGCGGTAAGACG 1309484 Query 164560 TTAATGGCTCGATGCATTGCTCAAGCTTTTAAATC---GCGACCCGTTAAAATTGTTAAT 164616 | |||||||| |||| |||| | |||||| | || ||| ||| | || ||| Sbjct 1309485 CTTCTGGCTCGACAGATTGG-CAAGATGTTAAATGCAAGAGAGCCG--AAAGTAGTCAAT 1309541 Query 164617 GGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTT 164676 || || ||| | | ||||||||||| || || ||||| ||||| || | ||| | ||| Sbjct 1309542 GGACCAGAAATCCTTAACAAATATGTGGGAGAATCAGAGGCTAACATTCGCAAGCTCTTT 1309601 Query 164677 CAGGAGGCTGAAGAAGAACAAAAGA 164701 || |||||||| || |||| || Sbjct 1309602 GCTGATGCTGAAGAGGAGCAAAGGA 1309626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595382684810400