Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq2054 134 2e-26 >seq2054 Length=1030836 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| ||||| || || || ||| |||| || |||||| ||||||||||||||| || | Sbjct 304897 AGGGTTACCTCGGTTGCCAAGCCTTGTCGGAGATGATCAAGTTTTACCTGGAGGTGGTGA 304838 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 ||||||||||||| || |||| ||| ||| ||| ||||||||||| || ||||| || | Sbjct 304837 TGCCACAGGCTGAGAACCAGGGCCCTGACGTCAAGGAGCACGTGAATTCCCTGGGGGAAA 304778 Query 10260 ATCTAAAGACCCTAAGG 10276 |||| |||||||| ||| Sbjct 304777 ATCTGAAGACCCTCAGG 304761 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| |||||||| ||||||||||| |||||||| ||||| ||||| | Sbjct 302576 AGCTCCAAGAGAAAGGTGTCTACAAGGCCATGAGTGAGTTTGACATCTTTATCAACTACA 302517 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||| | || | || ||||| || Sbjct 302516 TAGAAACCTATACAACAATGAAGAT 302492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546929705885440