Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq809 147 3e-30 >seq809 Length=1220577 Score = 147 bits (162), Expect = 3e-30 Identities = 177/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| | || || ||||||| || || ||| |||||||||||| || |||| || Sbjct 1199285 ATGAGCCTGGTTGTTTGAAACAACTGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGC 1199344 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 ||||| ||||||||||| ||||||| ||||| || || ||||||||||| ||||| || Sbjct 1199345 ACATCACACACTCTGTTATGTTCCCGAAGCCAAATTGTGGCGTACATCATCAGACCTGGG 1199404 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||| ||||| | || || || ||||| | || | | || || || | || || Sbjct 1199405 ACCAGACCAAAGACTTCCTGGCCCACAGCAAACCGTAGGTGCTCAGGGACGTGAGGTGGG 1199464 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| |||| |||| | ||| ||||||| || || ||||| ||| Sbjct 1199465 TAGATCATCTCTGCCTGAGTATCTCTGACAGTGGGAGGATACACCTCTCCATCAATTATC 1199524 Query 9862 T 9862 | Sbjct 1199525 T 1199525 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| |||| |||||| ||||| || || |||||| ||| ||| | || Sbjct 1200383 TCTTACCCCATGGCCCAATCCTTTTGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 1200442 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || || |||| || |||||||| | || || ||||||||||| Sbjct 1200443 AAACTGATGAGTGAAGTGCTGTGCAAAGAACGCAAACATCAGATTTGTACCCTGGGGATC 1200502 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 || |||| | || | |||||| ||||||||||| Sbjct 1200503 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 1200540 Score = 102 bits (112), Expect = 1e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | ||||| ||||| || ||||| || |||||||| || | ||| Sbjct 1201161 ACCTTTCACACCCATGGGAGTAGGACAGTCCTGAGGTACAGGAGGTAGGGCTCTGGTGTA 1201220 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 |||||||| ||||| || |||||||||||| ||| |||||| | |||||| | || Sbjct 1201221 GTAGGAGAGGTTGGAAAAGGCTTCCCAGCTTTTGTAGCCGTAGTGAACATTGTAGGTTGG 1201280 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 ||||| |||| ||||| | ||| ||||| Sbjct 1201281 GGGGCTATCAACCAAATGTGCTCTTGCTGAA 1201311 Score = 91.5 bits (100), Expect = 2e-13 Identities = 179/265 (68%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 9320 CACTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGG 9379 |||| || | |||||| ||||| | || || || || || | ||||| | ||||| Sbjct 1198594 CACTCACCCTGCCAGCAATTTGCCTGGTAAATGACTCGACAAAGTGGGTGAGCCCGTGTT 1198653 Query 9380 TCATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCT 9439 || | ||| || |||||||| || || | |||| |||| |||||||| Sbjct 1198654 CCAGTAATATCGAGTTGTTGTAGACAAACTGTCGATAGTTGTACTCCTGGGCATCAATCT 1198713 Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499 || | || ||||| |||| ||||||||| || | ||||||| || | | |||| Sbjct 1198714 GAATTGTGTCAGGCATAAGAGGATGCCAGTGGTAGAGTGTGTTAAATTCAGCAGCAATAC 1198773 Query 9500 GATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGT 9559 | ||||||||||||||| ||| ||||| || || | |||| ||||| |||| Sbjct 1198774 GGTTTTGGTACTGGAACTCTTGGTTAAAAAGCAGCTCTGGGTCAAACTTCAACTTGAAGT 1198833 Query 9560 GGTAGCCGCTGAGCTGCTGAACATA 9584 | ||||| || | ||||| || || Sbjct 1198834 GATAGCCACTCAAGTGCTGCACGTA 1198858 Score = 84.2 bits (92), Expect = 3e-11 Identities = 98/131 (75%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 10751 ACAATCTTACGAGTCGTGCAGTCATGGTCGTAGAAACCCGTGTGTGTGCAATCGCATTTG 10810 |||| |||||| || | || | | | | ||||| || ||| | |||||||| |||| Sbjct 1202222 ACAAACTTACGTGTTGAACAATTTTCGCCATAGAATCCTGTGCGAGTGCAATCACATTGA 1202281 Query 10811 TAATGATGGAACCCCACGGTCATGCAGATGCCTCT-TTTTGACACGGATGGGAGCAACAA 10869 || |||| ||| || || ||||| || | |||| ||||||||||||| ||| |||||| Sbjct 1202282 TACTGATCGAATCCTACAGTCATACATACACCTCGGTTTTGACACGGATTGGAACAACAA 1202341 Query 10870 GGGTTGGCTAC 10880 || || ||||| Sbjct 1202342 GGATTTGCTAC 1202352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707942977147360