Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2502 136 4e-27 seq3414 95.1 1e-14 seq3163 93.3 4e-14 seq2217 82.4 7e-11 >seq2502 Length=682766 Score = 136 bits (150), Expect = 4e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||||| ||||| |||| |||| ||||| ||| ||||| || || | Sbjct 414269 AAAAACTTAAACACCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGAT 414210 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || || ||| ||| ||||||||||| || |||| || || || || Sbjct 414209 GTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAAATCAACCTCTG 414150 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| || |||||||| ||||| ||||| | || || ||||||||| ||| ||||| Sbjct 414149 CTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC 414090 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | | || || |||| ||||| || || || || || || ||||| ||||||||||| Sbjct 414089 ACTGGGCTCTACTTCAAGGGTGATTGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 414030 Score = 129 bits (142), Expect = 5e-25 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| || | |||||||||| ||| ||||| || || | ||| || || | Sbjct 412796 CCACCTCTCAGACGAAGAACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 412737 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || || ||| ||||||||||| || ||||||| || || ||||| || || | Sbjct 412736 A-AG-GTCCGACCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTG 412679 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| | || ||||||||||| ||| |||||| | | || | Sbjct 412678 GGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCA 412619 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| ||||||||||| || || | ||||| |||||||||||||| Sbjct 412618 CCTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTTACAAAGATCTGCAT 412570 >seq3414 Length=315879 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| || || ||| || || || || | ||| || || | |||| | | Sbjct 11384 CGCAGCACCAGGTACAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCA 11325 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 |||||||||| ||| | | |||| || | | |||| || || || || || || ||| Sbjct 11324 TCCTCCAGCTATTTGCTGGCAAAAATCAGACGCTGCTTGTCAGGTGGGATGCCCTCCTTG 11265 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| || ||||| ||| |||||| | | | ||| |||| |||||| Sbjct 11264 TCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCACTGGGCTTGACCTCAAGAGTGATG 11205 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||||||||| Sbjct 11204 GTCTTACCTGTGAGGGTCTTCACAAAGATCTGCAT 11170 >seq3163 Length=297541 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 || || |||| || || | |||| |||| ||| || ||||| || | ||| || || Sbjct 214898 CCGCCCCTCAGACG-AAGAACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGA 214956 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 | |||| | |||||||||||| || || ||||||| | || ||||| || ||||| Sbjct 214957 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGG 215016 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 || |||||||| || | ||| || || || || | | || ||| | | || || Sbjct 215017 GATGCCTTCTTTATCCTGAATCTTGGCTTTCACATTCTCAATGGTATCACTGGGTTCCAC 215076 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| ||||| || || ||||| ||||| || ||||| Sbjct 215077 CTCCAGAGTGATGGTCTTTCCTGTTAGGGTTTTTACAAAAATTTGCAT 215124 >seq2217 Length=590369 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| | | || || || | ||| || || | |||| | | Sbjct 77070 CGCAGCACCAGGTGCAGGGGGAACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCA 77129 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||| |||||||||| | | |||| || | | ||||| || || || || || || ||| Sbjct 77130 TCCCCCAGCTGTTTGCTGGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTG 77189 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| || ||||| ||| ||||| | | ||||| || | |||||| Sbjct 77190 TCTTGGATTTTGGCTTTGACATTTTCGATGATGTCACTGGGCTCGACCTCGAGAGTGATG 77249 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || || || || || || ||||||||||||||| Sbjct 77250 GTCTTGCCTGTGAGGGTCTTCACAAAGATCTGC 77282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447923074473840