Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq51 98.7 1e-15 seq1287 84.2 2e-11 >seq51 Length=3716683 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 || ||||||| ||||| || | ||| ||||||||| ||| | ||||| | | | Sbjct 849287 TTCAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTTTCCGCCATAACTGCAAAAC 849228 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||||||||| |||||||| || ||||| || || ||| || Sbjct 849227 GCTGATACTCTGAAACTCGTTTTTCGAAGAAATTTGTTTTCCCTTCTAAAGAAATATTTT 849168 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 849167 CCATAAAATCAAAGGGATTTTC 849146 >seq1287 Length=728452 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||| || |||||||| || | ||| ||| ||| | | ||||| | |||||| | Sbjct 543580 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTGGACATCACTCCCATCCT 543521 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||||| || | ||||| || || || || || ||||| ||||||| ||| ||| || Sbjct 543520 CTGATACTCGCCCACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 543461 Query 21247 CATAAAATCAAATGGATTTTC 21267 |||||| |||||||||||||| Sbjct 543460 CATAAAGTCAAATGGATTTTC 543440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531464016360560