Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq58 134 2e-26 seq1287 114 2e-20 seq51 102 1e-16 >seq58 Length=3827145 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| |||||||| || || || ||||||||||| | Sbjct 3738281 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTATATGTTGCTCGTATACGGTTCAATG 3738222 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| |||| |||||||||||||| ||||| ||||| || || | | |||| Sbjct 3738221 GACTCATTATTCCCCAGTATTTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGTAAA 3738162 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | |||||| Sbjct 3738161 CTGTTTCTTACACCGTA 3738145 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || || || | || | Sbjct 3727609 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAACAGGTCCCGGGCACG 3727550 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 ||||| || || ||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 3727549 CTGTTCTTCCTTGCCTGTGTTCTTCTTTAAATCAAGGAACTCGAAGATGTCTAAATGCCA 3727490 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 3727489 AGGCTCCAGGTAAATAGC 3727472 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||| || || ||||| || | || || || | ||||||||| || || | ||||| | Sbjct 3732401 CATAGGTTTCATATGGACCATGCTCCTTGGCCAATTCACAACTGGCTTCCAGGGCACCAT 3732342 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||||||||| || || | |||||| | || || || | || ||||| |||| Sbjct 3732341 AATAAATGGTTTCAAAAATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGAT 3732282 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62752 | | | || ||||| || || || | ||||| || ||||| || ||||| | ||| Sbjct 3732281 ACCTCATCAGGATAAAAGCATCAGCCAGACCTTGCACCCCAATTCCAATAGGCCGATG 3732224 >seq1287 Length=728452 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| |||||||| ||||| || ||||| | || || || | Sbjct 541987 CCTCATCTCTGCTAATCAGTTCATTGGAAAAGGTGAGGCCAGGCATCAATCCTCGTTTCT 541928 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || ||||||||||||| ||||||||| || ||||||| Sbjct 541927 TGAGCCAGAATATCGATGCAAAGGAACCAGAAAAGAAGACTCCTTCTACAGCTGCAAAGG 541868 Query 33446 C 33446 | Sbjct 541867 C 541867 >seq51 Length=3716683 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || |||| || || ||||| ||||| || |||||||| ||||| || || | ||| || Sbjct 836208 TCATCTCGGCTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 836149 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || |||||||| ||||| || || ||||| ||||||||||| Sbjct 836148 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCCTCTACAGCAGCAAAGGC 836090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622435651333040