Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2502 100 3e-16 seq3163 87.8 2e-12 seq1368 87.8 2e-12 >seq2502 Length=682766 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||||||||| ||||| || ||| | |||||| | || | || | | Sbjct 412569 AATGCAGATCTTTGTAAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTGGAGCCCAG 412628 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | ||||| |||||| ||||| ||||| || || || || || Sbjct 412629 TGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCA 412688 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || | || | | || ||||| || ||||||| | | | | | ||||| || Sbjct 412689 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGTCGGACCTTGTCTGACTACAA 412748 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || |||||||| ||| | || |||| || | || ||||| || Sbjct 412749 CATCCAGAAAGAATCCACTCTGCACTTGGTTCTTCGTCTGAGAGGTGG 412796 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || | |||||| | ||| |||| | | Sbjct 414030 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACAATCACCCTTGAAGTAGAGCCCAGT 414089 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 414090 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 414149 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | |||| | || ||||| || ||||||| | | | | ||||| ||| Sbjct 414150 CAGAGGTTGATTTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 414209 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| ||| | || ||||||||| | | || ||||| Sbjct 414210 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCTTGAGGGGAGG 414256 >seq3163 Length=297541 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 |||||||||| | ||||||||||| |||| ||||| | ||||| | || | ||| | Sbjct 215128 CAAAATGCAAATTTTTGTAAAAACCCTAACAGGAAAGACCATCACTCTGGAGGTGGAACC 215069 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | || ||||| ||| | || ||| |||||| || |||||||| || ||||| || Sbjct 215068 CAGTGATACCATTGAGAATGTGAAAGCCAAGATTCAGGATAAAGAAGGCATCCCTCCTGA 215009 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || || || ||||| | | ||||| || || || |||| | | | ||||| Sbjct 215008 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGACTA 214949 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || ||| | ||||| || || Sbjct 214948 CAACATCCAGAAGGAGTCAACTCTGCATCTTGTTCT 214913 >seq1368 Length=2199528 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||||| ||| | ||||||||||| |||| ||||| | ||||| | || | ||| | Sbjct 788679 CAAAACACAAATTTTTGTAAAAACCGTAACAGGAAAGACCATCACTCTGGAGGTGGAACC 788738 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | || ||||| ||| | || ||| |||||| || |||||||| || ||||| || Sbjct 788739 CAGTGATACCATTGAGAATGTGAAAGGCAAGATTCAGGATAAAGAAGGCATCCCTCCTGA 788798 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || || || ||||| | | ||||| || || || |||| | | | | ||||| Sbjct 788799 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGTCGCACTCTTTCTGACTA 788858 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || ||||| || ||| | ||||| || || Sbjct 788859 CAACATCCAGAAAGAGTCAACTCTGCATCTTGTTCT 788894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478269334403680