Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq3163 89.7 4e-13 >seq3163 Length=297541 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 ||||||||||||||||| ||||| || || ||||| ||||| || | || ||| || Sbjct 215127 AAAATGCAAATTTTTGTAAAAACCCTAACAGGAAAGACCATCACTCTGGAGGTGGAACCC 215068 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || || ||| | || ||| || ||| |||||||||||| |||| ||| Sbjct 215067 AGTGATACCATTGAGAATGTGAAAGCCAAGATTCAGGATAAAGAAGGCATCCCTCCTGAC 215008 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || || || | ||| ||||| || | || |||| | || | | || || Sbjct 215007 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGACTAC 214948 Query 115463 AACATTCAAAAAGAGTCTACTATACAT 115489 ||||| || || ||||| ||| | ||| Sbjct 214947 AACATCCAGAAGGAGTCAACTCTGCAT 214921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425003450187280