Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3163 107 2e-18 seq1368 84.2 2e-11 seq58 82.4 7e-11 >seq3163 Length=297541 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 131005 GAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCG 131064 ||||| || | || ||| || || | ||| | || |||||||| || |||||||| || Sbjct 214895 GAGCCGCCCCTCAGACGAAGAACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCA 214954 Query 131065 CTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGA 131124 | ||||| ||||| |||||||||||||| |||| | | ||||||||| ||| Sbjct 214955 GAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGA 215014 Query 131125 GGGATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTC 131183 ||||| |||||||| || ||| | | || || | | ||| | ||||| ||| || Sbjct 215015 GGGATGCCTTCTTTATC-CTGAATCTTGGCTTTCACATTCTCAATGGTATCACTGGGTTC 215073 Query 131184 GATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || | || | ||| || || ||||| |||||||| ||||| ||||| Sbjct 215074 CACCTCCAGAGTGATGGTCTTTCCTGTTAGGGTTTTTACAAAAATTTGCAT 215124 >seq1368 Length=2199528 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 131005 GAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCG 131064 ||||| | | || || || || | ||| | || ||||| || || |||||||| || Sbjct 788912 GAGCCGGCCCTCAGACAAAGAACAAGATGCAGAGTTGACTCTTTCTGGATGTTGTAGTCA 788853 Query 131065 CTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGA 131124 | ||||| ||||| |||||||||||||| |||| | | ||||||||| ||| Sbjct 788852 GAAAGAGTGCGACCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGA 788793 Query 131125 GGGATTCCTTCTTTGTCGGTGATTTTCTGC--TTGAGCTGCTCCACAGTATCGGTGGACT 131182 ||||| |||||||| || ||| | | ||| || | | ||| | ||||| ||| | Sbjct 788792 GGGATGCCTTCTTTATC-CTGAATCT-TGCCTTTCACATTCTCAATGGTATCACTGGGTT 788735 Query 131183 CGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTG 131231 | | || | || | ||| || || |||| |||||||| ||||| || Sbjct 788734 CCACCTCCAGAGTGATGGTCTTTCCTGTTACGGTTTTTACAAAAATTTG 788686 >seq58 Length=3827145 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | || || || | ||||| ||||| |||||||| |||||||| || ||||| | Sbjct 3728830 TGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGT 3728771 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 |||| |||| || || | || ||||||||||||||||| Sbjct 3728770 TACTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGG 3728731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471625194888960