Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3414 129 5e-25 seq2502 127 2e-24 seq3163 116 3e-21 seq2217 116 3e-21 seq1368 107 2e-18 seq1059 107 2e-18 seq1852 82.4 6e-11 seq336 82.4 6e-11 >seq3414 Length=315879 Score = 129 bits (142), Expect = 5e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || ||||| || |||||||||| || | ||| Sbjct 11168 AGATGCAGATCTTTGTGAAGACCCTCACAGGTAAGACCATCACTCTTGAGGTCAAGCCCA 11227 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || ||||| ||||| |||||||||||||| || ||||| || Sbjct 11228 GTGACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACA 11287 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| || |||||| ||||| || | |||||| | |||| |||| || |||| Sbjct 11288 AGCAGCGTCTGATTTTTGCCAGCAAATAGCTGGAGGATGGCTGCACTCTCTCAGACTACA 11347 Query 22397 ACATTCAAAAAGAATCCAC 22415 |||| || ||||| ||||| Sbjct 11348 ACATCCAGAAAGAGTCCAC 11366 >seq2502 Length=682766 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| ||||| |||||||| |||| ||||| ||||| ||| Sbjct 412570 ATGCAGATCTTTGTAAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTGGAGCCCAGT 412629 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| || ||||||||||| || || ||||| || || Sbjct 412630 GACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAG 412689 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || |||||| | || ||| || ||| | || || |||||| Sbjct 412690 CAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGTCGGACCTTGTCTGACTACAAC 412749 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || ||||||||||| | || || ||| Sbjct 412750 ATCCAGAAAGAATCCACTCTGCACTTGGTT 412779 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||| |||||||| || ||| Sbjct 414029 GATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACAATCACCCTTGAAGTAGAGCCCAG 414088 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || ||||||||||| || ||||| || || || Sbjct 414089 TGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCA 414148 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || |||||| | || ||| |||||| | || || ||||| Sbjct 414149 GCAGAGGTTGATTTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 414208 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||| || ||||||||||| | || | || |||| ||| | |||||| || Sbjct 414209 CATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCTTGAGGGGAGGTGTT 414260 >seq3163 Length=297541 Score = 116 bits (128), Expect = 3e-21 Identities = 164/230 (71%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 22202 TTTATACATTT---GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCA 22258 ||| || |||| || || |||||||||||||| ||||| |||| || || || ||| Sbjct 215144 TTTTTAAATTTTAGGTCAAAATGCAAATTTTTGTAAAAACCCTAACAGGAAAGACCATCA 215085 Query 22259 CTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGG 22318 |||| || |||||| ||| |||||| | || || | ||| || ||||| || || | Sbjct 215084 CTCTGGAGGTGGAACCCAGTGATACCATTGAGAATGTGAAAGCCAAGATTCAGGATAAAG 215025 Query 22319 AGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACC 22378 | || || || || || || || | || || ||||| ||||| ||| | |||||| || Sbjct 215024 AAGGCATCCCTCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCC 214965 Query 22379 GCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||| | || || |||||||| || || || || || | ||| | ||| Sbjct 214964 GCACTCTTTCTGACTACAACATCCAGAAGGAGTCAACTCTGCATCTTGTT 214915 >seq2217 Length=590369 Score = 116 bits (128), Expect = 3e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGA 22280 ||| || ||||| || || | || || || || ||||||| || || || ||| || Sbjct 77282 GCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACTCTCGAGGTCGAGCCCAGTGA 77223 Query 22281 TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACA 22340 | | | || || ||||| ||||| |||||||||||||| || ||||| || || || Sbjct 77222 CATCATCGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAGCA 77163 Query 22341 ACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400 ||||| || |||||| |||||||| | | |||| | |||| |||| || |||||||| Sbjct 77162 GCGTCTGATTTTTGCCAGCAAACAGCTGGGGGATGGCTGCACTCTCTCAGACTACAACAT 77103 Query 22401 TCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGG 22442 || ||||| | | || | || | || |||| ||||||| Sbjct 77102 CCAGAAAGAGTTCCCCCTGCACCTGGTGCTGCGTCTGCGCGG 77061 >seq1368 Length=2199528 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 22222 CAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGAT 22281 ||||||||||| ||||| |||| || || || ||||||| || |||||| ||| ||| Sbjct 788686 CAAATTTTTGTAAAAACCGTAACAGGAAAGACCATCACTCTGGAGGTGGAACCCAGTGAT 788745 Query 22282 ACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAA 22341 ||| | || || | ||| || ||||| || || || || || || || || || || Sbjct 788746 ACCATTGAGAATGTGAAAGGCAAGATTCAGGATAAAGAAGGCATCCCTCCTGACCAGCAG 788805 Query 22342 CGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATT 22401 | || || ||||| ||||| ||| | |||||| ||||| | || || |||||||| Sbjct 788806 AGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGTCGCACTCTTTCTGACTACAACATC 788865 Query 22402 CAAAAAGAATCCACCATACATTTAGTT 22428 || ||||| || || | ||| | ||| Sbjct 788866 CAGAAAGAGTCAACTCTGCATCTTGTT 788892 >seq1059 Length=696884 Score = 107 bits (118), Expect = 2e-18 Identities = 144/200 (72%), Gaps = 8/200 (4%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||| | || ||||| || || | || || || || ||| ||| || || || ||| Sbjct 62235 AGATGTAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCATTCTCGAGGTCGAGCCCA 62176 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || || | || || ||||| ||||| |||||||||||||| | ||| | Sbjct 62175 GTGAC-CCATCGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCA-------CGACC 62124 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| || ||||||||||||||| | |||||| |||||| |||| || |||| Sbjct 62123 AGCAGCGTCTGATTTTTGCCGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACA 62064 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || ||||| |||||| Sbjct 62063 ACATCCAGAAAGAGTCCACC 62044 >seq1852 Length=1880878 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 || || ||||| || || || ||||| || ||||||||||||||| |||||||| |||| Sbjct 1680845 GGCATCCCACCTGACCAGCAGCGTCTGATTTTTGCCGGCAAACAGCTAGAGGATGGCCGC 1680786 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAG 22408 || |||| || |||||||| || |||| Sbjct 1680785 ACTCTCTCAGACTACAACATCCAGAAAG 1680758 >seq336 Length=3219352 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| | | | | | | | || || ||||||| || | || ||| Sbjct 1022658 AGATGCAGATCTTTGTGAGACCCTCA--CAGGAAGACCATCACTCTGGAGTTCGAGCCCA 1022715 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 ||| || | | || ||||| ||||| |||||||||||||| || |||| || | Sbjct 1022716 GTGATTCCATTGCAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCTCACCTGACC 1022775 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | | ||||| || |||||| ||| |||| | |||||| || || |||| || |||| Sbjct 1022776 AGCGGCGTCTGATTTTTGCCAGCAGACAGCTGGAGGATGGCCACAGTCTCTCGGACTACA 1022835 Query 22397 ACATTCAAAAAG 22408 ||| || |||| Sbjct 1022836 GCATCCAGAAAG 1022847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419391946613110