Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2502 185 2e-41 seq3414 131 3e-25 seq2217 131 3e-25 seq875 113 8e-20 seq1059 105 1e-17 >seq2502 Length=682766 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||||| |||| ||| || ||||| ||||| |||||||| || || || Sbjct 414256 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 414197 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| ||||| || || || | || || ||||| || ||| Sbjct 414196 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGAGGA 414137 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| ||||||||| |||||||||||| | |||||| Sbjct 414136 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCTACT 414077 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || ||||| |||||||| ||||| |||||||| Sbjct 414076 TCAAGGGTGATTGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 414030 Score = 172 bits (190), Expect = 1e-37 Identities = 164/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||| ||||| |||||||| || || || | |||| |||||||| Sbjct 412778 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTCCGACCATCTTCC 412719 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| ||||| || || || | || || ||||| ||||| ||||||||||||||||| Sbjct 412718 AGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGG 412659 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||||||||||| |||||||||||| | || || || | |||||||||||| Sbjct 412658 ATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTA 412599 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| | ||| || || || ||||||||| Sbjct 412598 CCCGTTAAGGTTTTTACAAAGATCTGCATT 412569 >seq3414 Length=315879 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| || || ||||||||||| |||||||| || || ||| Sbjct 11396 CCACCACGCAGACGCAGCACCAGGTACAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAG 11337 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | || || | ||| || || || | || | ||| ||||| Sbjct 11336 AGAGTGCAGCCATCCTCCAGCTATTTGCTGGCAAAAATCAGACGCTGCTTGTCAGGTGGG 11277 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| || || || ||||| ||||||||||| | | || Sbjct 11276 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCACTGGGCTTGACC 11217 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||||||||| || || |||||||| Sbjct 11216 TCAAGAGTGATGGTCTTACCTGTGAGGGTCTTCACAAAGATCTGCAT 11170 >seq2217 Length=590369 Score = 131 bits (144), Expect = 3e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 68238 CCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGT 68297 ||||| || |||| |||| ||| || | | ||||||| |||||||| || || ||||| Sbjct 77061 CCGCGCAGACGCAGCACCAGGTGCAGGGGGAACTCTTTCTGGATGTTGTAGTCTGAGAGA 77120 Query 68298 GTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATG 68357 || | ||||| | | ||| || | ||| || || || | || ||||| ||||| ||| Sbjct 77121 GTGCAGCCATCCCCCAGCTGTTTGCTGGCAAAAATCAGACGCTGCTGGTCAGGTGGGATG 77180 Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || ||||||||||| || || || ||||| |||||| |||| | || || || Sbjct 77181 CCCTCCTTGTCTTGGATTTTGGCTTTGACATTTTCGATGATGTCACTGGGCTCGACCTCG 77240 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | |||||||| || || ||||||||||| || || |||||| || Sbjct 77241 AGAGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCGTT 77285 >seq875 Length=1260434 Score = 113 bits (124), Expect = 8e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || | ||| || | || || || ||||| ||||| ||||||||||| || Sbjct 610284 CCACCACGGAGTCTCAACACAAGATGAAGAGTCGACTCCTTTTGAATGTTATAATCTGAC 610343 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | |||| |||||||| | |||| || || || | || || || | || || ||| Sbjct 610344 AAGGTCCGTCCATCTTCCAGTTGCTGGCCAGCAAACAGCAGCCTCTGCTAATCAGGAGGA 610403 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| | || |||| ||||| || || |||||||| | | ||| || Sbjct 610404 ATCCCTTCCTTACCCTGGATCTCGGCCTTTACATTTTCTATGGTGTCCGAAGGTTCAACC 610463 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | | || | ||| ||||| ||||||||||| ||||| |||||||| Sbjct 610464 TTGAGGGCAACGGTCTTTCCTGTGAGGGTCTTCACGAAAATCTGCAT 610510 >seq1059 Length=696884 Score = 105 bits (116), Expect = 1e-17 Identities = 149/209 (71%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| | | || ||||||||||| |||||||| || || ||||| || | ||||| || Sbjct 62033 ACCAGGGGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCC 62092 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || ||||| || || || | || |||||| |||| ||||||||||| Sbjct 62093 AGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTCG-------TGCCCTCCTTGTCTTGG 62145 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || ||||| ||||||| ||| | || || || | ||||||| || Sbjct 62146 ATTTTGGCTTTGACATTTTCGATGG-GTCACTGGGCTCGACCTCGAGAATGATGGTCTTG 62204 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| || || |||| ||| Sbjct 62205 CCTGTGAGGGTCTTCACAAAGATCTACAT 62233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920865586725680