Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2502 100 2e-16 seq3163 95.1 1e-14 seq1368 95.1 1e-14 >seq2502 Length=682766 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || |||||||| || |||||||| || || || ||| |||||| Sbjct 412779 AACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTCCGACCATCTTC 412720 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || ||||| ||||| |||| | | ||| ||||| || || |||||||| ||||| Sbjct 412719 CAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTG 412660 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 |||||| || | | || | |||||| ||| || || || | ||| | ||||| Sbjct 412659 GATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTT 412600 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||||||||||| |||||||| Sbjct 412599 ACCCGTTAAGGTTTTTACAAAGATCTGCAT 412570 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| || || || || |||||| || ||||| ||| Sbjct 414226 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCA 414167 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || | | ||| ||||| |||||||||||||| ||||| ||||| || Sbjct 414166 GCAAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTG 414107 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || || | ||| | || || || ||||| || Sbjct 414106 ACGTTCTCGATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTCTTCCCCGTCAGGGTC 414047 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 414046 TTCACGAAGATCTGCAT 414030 >seq3163 Length=297541 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | || || || || || |||||||| || | ||| || ||| || Sbjct 214915 AACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTC 214974 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || || || || || ||||||| | ||| ||||| ||||| ||||||||||| || Sbjct 214975 CAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTG 215034 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 |||||| ||| | | |||| ||| || ||| ||| || |||| || | || || Sbjct 215035 AATCTTGGCTTTCACATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTCTT 215094 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || |||||||||||||| ||||| Sbjct 215095 TCCTGTTAGGGTTTTTACAAAAATTTGCAT 215124 >seq1368 Length=2199528 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | || || ||||| || |||||||| || | ||| ||| ||| || Sbjct 788892 AACAAGATGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCCTC 788833 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || || || || || ||||||| | ||| ||||| ||||| ||||||||||| || Sbjct 788832 CAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTG 788773 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 |||||| ||| | | |||| ||| || ||| ||| || |||| || | || || Sbjct 788772 AATCTTGCCTTTCACATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTCTT 788713 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTG 114379 || || | |||||||||||||| || Sbjct 788712 TCCTGTTACGGTTTTTACAAAAATTTG 788686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419798021230728