Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq51 93.3 8e-14 >seq51 Length=3716683 Score = 93.3 bits (102), Expect = 8e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || || ||| | ||||||||| | || || ||||| || |||||||| || | || || Sbjct 836075 GGGGAAAGGATCGTAGCCTTTGCTGCTGTAGAGGGGATTTTCTTCTCTGGATCTTTTGCT 836134 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || |||||||| ||| ||| |||| | ||||| |||||||| ||||| || ||||| Sbjct 836135 GCTATATTCTGGCTAAAGAAGAGAGGTCTT-ATGCCTGGACTCACTTTCTCCAATGAACT 836193 Query 42815 CATCAGCAGGGACGA 42829 ||||||| | || || Sbjct 836194 CATCAGCCGAGATGA 836208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943563732257440