Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3163 109 1e-18 seq2217 104 6e-17 seq3414 96.9 8e-15 seq1368 96.9 8e-15 seq1059 91.5 3e-13 >seq3163 Length=297541 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| || || || | || || ||||| ||| Sbjct 214934 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAG 214993 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| |||||||||||||| || || |||||||| || Sbjct 214994 ATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGAATCTTGGCTTTCACATTC 215053 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || | ||| || || || ||||| ||||| || || || || || || Sbjct 215054 TCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTCTTTCCTGTTAGGGTTTTTACA 215113 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 215114 AAAATTTGCATTTTG 215128 >seq2217 Length=590369 Score = 104 bits (114), Expect = 6e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | ||| |||| || || | | ||||| | || || Sbjct 77094 TCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCCCCAGCTGTTTGCTGGCAAAA 77153 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | |||||| || || || || |||||||| ||||| || ||| Sbjct 77154 ATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTT 77213 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || | || || ||||| ||||| ||||| || || || ||||| || Sbjct 77214 TCGATGATGTCACTGGGCTCGACCTCGAGAGTGATGGTCTTGCCTGTGAGGGTCTTCACA 77273 Query 288463 AATATCTGCATT 288474 || |||||| || Sbjct 77274 AAGATCTGCGTT 77285 >seq3414 Length=315879 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | ||| |||| || || || | | ||| | || || Sbjct 11360 TCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCTCCAGCTATTTGCTGGCAAAA 11301 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| | | |||||| || || || || |||||||| ||||| || ||| Sbjct 11300 ATCAGACGCTGCTTGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTT 11241 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | | || || || ||||| ||||| || || || ||||| || Sbjct 11240 TCGATGGTGTCACTGGGCTTGACCTCAAGAGTGATGGTCTTACCTGTGAGGGTCTTCACA 11181 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 11180 AAGATCTGCAT 11170 >seq1368 Length=2199528 Score = 96.9 bits (106), Expect = 8e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || || || | || || ||||| ||| Sbjct 788873 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCCTCCAGCTGCTTGCCTGCAAAG 788814 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| |||||||||||||| || || ||||||| || Sbjct 788813 ATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGAATCTTGCCTTTCACATTC 788754 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || | ||| || || || ||||| ||||| || || | || || || Sbjct 788753 TCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTCTTTCCTGTTACGGTTTTTACA 788694 Query 288463 AATATCTG 288470 || || || Sbjct 788693 AAAATTTG 788686 >seq1059 Length=696884 Score = 91.5 bits (100), Expect = 3e-13 Identities = 135/191 (71%), Gaps = 8/191 (4%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | ||| ||||| || || || | ||||| || || || Sbjct 62051 TCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAAA 62110 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | | || || || || |||||||| ||||| || ||| Sbjct 62111 ATCAGACGCTGCTG-------GTCGTGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTT 62163 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || ||||| |||| ||||| || || || ||||| || Sbjct 62164 TCGAT-GGGTCACTGGGCTCGACCTCGAGAATGATGGTCTTGCCTGTGAGGGTCTTCACA 62222 Query 288463 AATATCTGCAT 288473 || |||| ||| Sbjct 62223 AAGATCTACAT 62233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178661479730532