Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3163 143 3e-29 seq1368 132 5e-26 seq350 116 4e-21 seq875 93.3 4e-14 seq2217 91.5 1e-13 seq1059 82.4 8e-11 >seq3163 Length=297541 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| | || | ||| || ||||| | || || || || || |||||||| || | Sbjct 214898 CCGCCCCTCAGACGAAGAACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAA 214957 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||||||||| ||| | ||||||| ||||||||| ||||| Sbjct 214958 AGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 215017 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || |||||||| || || | | || ||||| ||| ||| | ||||||| || ||||| Sbjct 215018 ATGCCTTCTTTATCCTG-AATCTTGGCTTTCACATTCTCAATGGTATCACTGGGTTCCAC 215076 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | |||||| || || | |||||||| |||||||||||||| Sbjct 215077 CTCCAGAGTGATGGTCTTTCCTGTTAGGGTTTTTACAAAAATTTGCATTTT 215127 >seq1368 Length=2199528 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || ||||| || |||||||| || | | ||||| | || Sbjct 788895 AAGAACAAGATGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATC 788836 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| ||| | ||||||| ||||||||| ||||| || |||||||| || Sbjct 788835 CTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATC 788776 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || || ||| ||| | ||||||| || ||||| || | ||| | ||| Sbjct 788775 CTGAATCTTGCCTTTCACATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGT 788716 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| || || | |||||||| |||||||| |||| Sbjct 788715 CTTTCCTGTTACGGTTTTTACAAAAATTTGTGTTTT 788680 >seq350 Length=1614380 Score = 116 bits (128), Expect = 4e-21 Identities = 161/221 (73%), Gaps = 7/221 (3%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| ||||| ||| | | |||||||| || | | || | | || Sbjct 327602 AAGAACAAGATGCCGAGTCGAGTCTCTCCGGATGTTGTAGTCAGAG----TGTGACCATC 327657 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| ||| | ||||||| |||||||| ||||| | |||||||| || Sbjct 327658 CTCCAGCTGCTTGCCTGCAAAGATGAGCCTGTGCTGGTCAGGAGGGGTGCCTTCTTTATC 327717 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 || | | || ||||| ||| ||| | ||||||| || | ||| || ||||| |||| Sbjct 327718 CTG-AATCTTGGCTTTCACATTCTCGATGGTATCACTGGGTTTCACCTCCACAGTGACGG 327776 Query 64410 TCTTGCCGGTCA-AAGTTTTTACGAAAATTTGCATTTTAAT 64449 || | || || | ||||||||||||||||||||||| || Sbjct 327777 TCCTTCCTGTTAGGGGTTTTTACGAAAATTTGCATTTTGAT 327817 >seq875 Length=1260434 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| ||||| || ||||||||||| ||||||| Sbjct 610283 ACCACCACGGAGTCTCAACACAAGATGAAGAGTCGACTCCTTTTGAATGTTATAATCTGA 610342 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | ||||| || |||| ||| ||| | | |||| ||||| || ||||| Sbjct 610343 CAAGGTCCGTCCATCTTCCAGTTGCTGGCCAGCAAACAGCAGCCTCTGCTAATCAGGAGG 610402 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || | || || | ||||||| || | || || | || || Sbjct 610403 AATCCCTTCCTTACCCTGGATCTCGGCCTTTACATTTTCTATGGTGTCCGAAGGTTCAAC 610462 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | | |||||||| || || | || || |||||||| ||||| || Sbjct 610463 CTTGAGGGCAACGGTCTTTCCTGTGAGGGTCTTCACGAAAATCTGCATCTT 610513 >seq2217 Length=590369 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 64220 CCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACG 64279 ||||||| | ||||| || || | | | ||||| || |||||||| |||| || Sbjct 77061 CCGCGCAGACGCAGCACCAGGTGCAGGGGGAACTCTTTCTGGATGTTGTAGTCTGAGAGA 77120 Query 64280 GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATT 64339 |||| | || | ||||| |||| |||| |||| || ||||||||||| || || || Sbjct 77121 GTGCAGCCATCCCCCAGCTGTTTGCTGGCAAAAATCAGACGCTGCTGGTCAGGTGGGATG 77180 Query 64340 CCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTC 64398 || || || ||||| | |||| ||||| ||| || | | |||| || || || || Sbjct 77181 CCCTCCTTGTCTTGGA-TTTTGGCTTTGACATTTTCGATGATGTCACTGGGCTCGACCTC 77239 Query 64399 TACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445 | ||| | ||||||||| || | || || || || || ||| ||| Sbjct 77240 GAGAGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCGTTT 77286 >seq1059 Length=696884 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/198 (70%), Gaps = 10/198 (5%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| |||| || ||||| | || || ||||| |||||| Sbjct 62045 GTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCG 62104 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| || |||||||||||| | || || || ||||| | |||| ||||| Sbjct 62105 GCAAAAATCAGACGCTGCTGGTCG-------TGCCCTCCTTGTCTTGGA-TTTTGGCTTT 62156 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || |||| || || || || | | | | ||||||||| || | || Sbjct 62157 GACATTTTCGA-TGGGTCACTGGGCTCGACCTCGAGAATGATGGTCTTGCCTGTGAGGGT 62215 Query 64426 TTTTACGAAAATTTGCAT 64443 || || || || | ||| Sbjct 62216 CTTCACAAAGATCTACAT 62233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499234504181360