Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq2502 87.8 1e-12 seq3163 84.2 2e-11 >seq2502 Length=682766 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | ||| || || || || || ||||| || |||||||| || | Sbjct 412796 CCACCTCTCAGACGAAGAACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCA--G 412739 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | ||||| | ||||| ||||| | ||||| | ||| ||||| || Sbjct 412738 ACAAGGTCCGACCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTG 412679 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 | || ||||||||||| || ||||| || ||| | || || || || || || Sbjct 412678 GGATGCCTTCCTTGTCTTGGATCTTTGCCTTG-ACATTCTCGATGGTGTCACTGGGCTCC 412620 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | ||| ||||||||||| || | ||||||||||| || ||||| Sbjct 412619 ACCTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTTACAAAGATCTGCAT 412570 >seq3163 Length=297541 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/226 (69%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| || || || || || || |||||||| || ||| | | | || || Sbjct 214915 AACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTC 214974 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || ||||| || | || | | ||| ||||| || || ||||| || || Sbjct 214975 CAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTG 215034 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| ||| ||| | || || ||||| || ||| || || | || ||||| || Sbjct 215035 AATCTTGGCTTTCACATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTCTT 215094 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAATTTT 15192 ||||| || |||||||||||||||||||| ||||| |||| ||| Sbjct 215095 TCCTGTTAGGGTTTTTACAAAAATTTGCAT-TTTGACCTAAAATTT 215139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357105855658790