Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2502 107 2e-18 seq2217 82.4 7e-11 >seq2502 Length=682766 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || ||||| || || ||||| || || || ||| ||| || Sbjct 412778 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTCCGACCATCTTCC 412719 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 |||||||| ||||| ||||||| | |||||| || || || ||||| |||||||| | Sbjct 412718 AGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGG 412659 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | |||| |||||| | ||| || || | ||| | ||||| Sbjct 412658 ATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTA 412599 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||||||||||| |||||||| Sbjct 412598 CCCGTTAAGGTTTTTACAAAGATCTGCAT 412570 >seq2217 Length=590369 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 126889 ACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCAT 126948 |||||| | |||| ||||| || | | ||||||| || || ||||| || | Sbjct 77060 ACCGCGCAGACGCAGCACCAGGTGCAGGGGGAACTCTTTCTGGATGTTGTAGTCTGAGAG 77119 Query 126949 CGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTAT 127008 |||| ||| | |||||||| | || | |||| |||||||| || || || || Sbjct 77120 AGTGCAGCCATCCCCCAGCTGTTTGCTGGCAAAAATCAGACGCTGCTGGTCAGGTGGGAT 77179 Query 127009 GCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTC 127068 |||||||||||| |||||| |||| | ||||| | |||| | |||||| || Sbjct 77180 GCCCTCCTTGTCTTGGATTTTGGCTTTGACATTTTCGATGATGTCACTGGGCTCGACCTC 77239 Query 127069 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 127111 || || | || ||||| || || || || ||||| |||||| Sbjct 77240 GAGAGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGC 77282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475110330630560