Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3163 84.2 2e-11 seq2502 82.4 7e-11 >seq3163 Length=297541 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || |||||||| ||||| ||||| ||||| || || || | || ||| ||| Sbjct 214916 ACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCC 214975 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || ||||| | || | | |||||||| || || |||||||||||||| ||| Sbjct 214976 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGA 215035 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||| | || | ||| || | || || || ||||| | || || Sbjct 215036 ATCTTGGCTTTCACATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTCTTT 215095 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||||||||||||||||||| Sbjct 215096 CCTGTTAGGGTTTTTACAAAAATTTGCAT 215124 >seq2502 Length=682766 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || ||||| || ||||| || || || | ||| | ||| |||| ||| Sbjct 412772 TGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTCCGACCATCTTCCAGCTGT 412713 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||| | |||||||| || || |||||||| || ||||| || ||| Sbjct 412712 TTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTT 412653 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | |||||| | ||| || || || || | ||||| || ||| Sbjct 412652 GCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCCGTT 412593 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||||||||||| || ||||| Sbjct 412592 AAGGTTTTTACAAAGATCTGCAT 412570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451632026272240