Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq809 152 7e-32 >seq809 Length=1220577 Score = 152 bits (168), Expect = 7e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || ||||||||||||||||| ||| ||||||| || || || ||||| || ||||| || Sbjct 1199294 GTTGTTTGAAACAACTGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACAC 1199353 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 || ||||| ||||| | ||||| || |||||||||||||| | ||| || || | |||| Sbjct 1199354 ACTCTGTTATGTTCCCGAAGCCAAATTGTGGCGTACATCATCAGACCTGGGACCAGACCA 1199413 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 || ||||| | ||||| ||||| || || | || || || | || | || | ||| Sbjct 1199414 AAGACTTCCTGGCCCACAGCAAACCGTAGGTGCTCAGGGACGTGAGGTGGGTAGATCATC 1199473 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 | |||| || ||| |||| ||||| ||||||| || || ||||| Sbjct 1199474 TCTGCCTGAGTATCTCTGACAGTGGGAGGATACACCTCTCCATCAAT 1199520 Score = 131 bits (144), Expect = 2e-25 Identities = 198/282 (70%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 ||||| ||||| || || || || || ||||| | || || || || | ||| | Sbjct 1197422 GGACAGCCCTTGACGTTACTGCAGATCAGAGACTGGAGGGAGGCTGTGTTGATGATTTTA 1197481 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 ||||| || || || || || ||||| || |||||||| || || ||||| || Sbjct 1197482 AAACCCACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTTAGGAGAACAGATAGGATTG 1197541 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 ||| |||||||||||| || || || || || || || | ||| ||||||| |||||| Sbjct 1197542 CCCAGGAGCCCTTTCAAAGAGAATGGTGCTCCAAGTTCTACCATGGTCTCACCAAAGATG 1197601 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133 | | | ||||| || ||||| || | | | ||| || ||||| | ||| || | ||| Sbjct 1197602 GAATCTGGACGAGGCTTTTCTACTAGAAGGGCAGGATACAGTTCCATAGCATCAATGTCA 1197661 Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 |||||||| || ||||| ||||| || || ||||| ||| Sbjct 1197662 CCATAGAGCAGCTCTAACTCTGCAGCCATTTCTTTCTCTCCT 1197703 Score = 131 bits (144), Expect = 2e-25 Identities = 135/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| ||||||||| | |||||||| ||||||||| ||| ||| | || Sbjct 1200383 TCTTACCCCATGGCCCAATCCTTTTGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 1200442 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || |||||||| || || ||||||||||| Sbjct 1200443 AAACTGATGAGTGAAGTGCTGTGCAAAGAACGCAAACATCAGATTTGTACCCTGGGGATC 1200502 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | || | | || || ||| |||||||||| | ||||||| || || Sbjct 1200503 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAG 1200559 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 ||||||||| || | |||||||| ||||| |||| || ||||| || | ||| || || Sbjct 1201161 ACCTTTCACACCCATGGGAGTAGGACAGTCCTGAGGTACAGGAGGTAGGGCTCTGGTGTA 1201220 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 ||||| || || ||||| ||||||||||| |||||||| || | | |||||| || Sbjct 1201221 GTAGGAGAGGTTGGAAAAGGCTTCCCAGCTTTTGTAGCCGTAGTGAACATTGTAGGTTGG 1201280 Query 10509 GGGACTGTCAATCA 10522 ||| || |||| || Sbjct 1201281 GGGGCTATCAACCA 1201294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723133692659600