Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3163 149 1e-30 seq1368 138 3e-27 seq2502 127 5e-24 seq875 100 7e-16 seq350 91.5 3e-13 seq2217 86.0 1e-11 >seq3163 Length=297541 Score = 149 bits (164), Expect = 1e-30 Identities = 164/218 (75%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || ||||| |||||||| |||| ||||||||||| | ||| | ||||| Sbjct 214913 AGAACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCC 214972 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| ||| || |||||| ||| Sbjct 214973 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 215032 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||| || | ||| || | | ||| || |||| ||||| ||| Sbjct 215033 TGAATCTTGGCTTTCACATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTC 215092 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || ||||| ||||||||||| |||||| Sbjct 215093 TTTCCTGTTAGGGTTTTTACAAAAATTTG---CATTTT 215127 >seq1368 Length=2199528 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || ||||| ||||| || |||| ||||||||||| | ||| | ||||| Sbjct 788894 AGAACAAGATGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCC 788835 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| ||| || |||||| ||| Sbjct 788834 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 788775 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||| || | ||| || | | ||| || |||| ||||| ||| Sbjct 788774 TGAATCTTGCCTTTCACATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTC 788715 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||||| ||||||||||| Sbjct 788714 TTTCCTGTTACGGTTTTTACAAAAATTTG 788686 >seq2502 Length=682766 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| ||||| || || || |||| ||||||||||| || || | |||||| Sbjct 414242 CAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATC 414183 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || || || || || | | ||||||||| ||| ||| ||||| || Sbjct 414182 TTCCAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 414123 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| ||| |||| |||||| | | ||||| || | ||||| || Sbjct 414122 TTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGT 414063 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || ||||| || || || Sbjct 414062 CTTCCCCGTCAGGGTCTTCACGAAGATCTG 414033 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| || || || |||| ||||||||||| ||| |||| |||||| Sbjct 412781 AGAACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTCCGACCATCT 412722 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || || || ||||| | | ||||||||| || || ||||| || Sbjct 412721 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 412662 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| || |||| |||||| | | || || || | ||||| || Sbjct 412661 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTT 412602 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| | ||||| ||||| || || Sbjct 412601 TTACCCGTTAAGGTTTTTACAAAGATCTG 412573 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| ||||| ||||| || |||| ||||||||||| || || | |||||| Sbjct 414013 AGAACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 413954 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||||| || || ||||| | | ||||||||| || Sbjct 413953 TCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCAGG 413913 >seq875 Length=1260434 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || ||||||| ||||| || ||||||||||||||||| | ||| || || | ||| ||| Sbjct 610290 CGGAGTCTCAACACAAGATGAAGAGTCGACTCCTTTTGAATGTTATAATCTGACAAGGTC 610349 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||| |||| || || || | || | ||||| || ||| ||| ||| Sbjct 610350 CGTCCATCTTCCAGTTGCTGGCCAGCAAACAGCAGCCTCTGCTAATCAGGAGGAATCCCT 610409 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||| |||| ||| || ||| | |||||| | | ||| || | | Sbjct 610410 TCCTTACCCTGGATCTCGGCCTTTACATTTTCTATGGTGTCCGAAGGTTCAACCTTGAGG 610469 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | | ||||| || ||||| || ||||| ||||| || Sbjct 610470 GCAACGGTCTTTCCTGTGAGGGTCTTCACGAAAATCTG 610507 >seq350 Length=1614380 Score = 91.5 bits (100), Expect = 3e-13 Identities = 153/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || ||||||| || | ||| ||||||||||| ||| ||||| Sbjct 327603 AGAACAAGATGCCGAGTCGAGTCTCTCCGGATGTTGTAGTCAG----AGTGTGACCATCC 327658 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | |||||||| ||| | |||||| ||| Sbjct 327659 TCCAGCTGCTTGCCTGCAAAGATGAGCCTGTGCTGGTCAGGAGGGGTGCCTTCTTTATCC 327718 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||| |||| ||| || | | || || |||| |||| ||| Sbjct 327719 TGAATCTTGGCTTTCACATTCTCGATGGTATCACTGGGTTTCACCTCCACAGTGACGGTC 327778 Query 199598 TTACCCGTGA-GAGTTTTCACAAAAATTTGGTACATTTT 199635 | || || | | ||||| || |||||||| |||||| Sbjct 327779 CTTCCTGTTAGGGGTTTTTACGAAAATTTG---CATTTT 327814 >seq2217 Length=590369 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || | |||| || |||| ||||||||| | | ||| Sbjct 77064 CGCAGACGCAGCACCAGGTGCAGGGGGAACTCTTTCTGGATGTTGTAGTCTGAGAGAGTG 77123 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||| || | ||| || || |||||||||||||| || || || Sbjct 77124 CAGCCATCCCCCAGCTGTTTGCTGGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCC 77183 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || || || ||| || || || ||||| | |||| | | || || || | Sbjct 77184 TCCTTGTCTTGGAT-TTTGGCTTTGACATTTTCGATGATGTCACTGGGCTCGACCTCGAG 77242 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || |||||||| || || Sbjct 77243 AGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTG 77281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177929296531498