Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2502 125 7e-24 seq2217 123 2e-23 seq3163 120 3e-22 seq3414 114 1e-20 seq1059 109 5e-19 seq1368 93.3 4e-14 >seq2502 Length=682766 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || || |||||| | || || ||| ||| Sbjct 414030 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACAATCACCCTTGAAGTAGAGCCCAGT 414089 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || ||||| | ||||| Sbjct 414090 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCA 414148 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| || || ||||||||||| || | |||||||| |||||||| Sbjct 414149 GCAGAGGTTGATTTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 414208 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || ||| | || ||||| |||| ||||| ||||| || || Sbjct 414209 CATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCTTGAGGGGAGG 414256 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || |||||||| | ||||| |||||||||||| | || || ||| ||| Sbjct 412569 AATGCAGATCTTTGTAAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTGGAGCCCAG 412628 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | ||| |||| ||||| || || || || | ||||| Sbjct 412629 TGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCA 412688 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||||||||| || | || ||| | |||||||| Sbjct 412689 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGTCGGACCTTGTCTGACTACAA 412748 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || ||| | || ||||| ||||| || ||| ||||||| || Sbjct 412749 CATCCAGAAAGAATCCACTCTGCACTTGGTTCTTCGTCTGAGAGGTGG 412796 >seq2217 Length=590369 Score = 123 bits (136), Expect = 2e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 ||| ||| || || || || || ||||| ||||| |||||||| |||| |||||| ||| Sbjct 77286 AAACGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACTCTCGAGGTCGAGCCCA 77227 Query 38302 CCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||| | |||| ||||||| ||||| ||||| || || | |||| Sbjct 77226 GTGACATCATCGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACC 77167 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| || |||||||||||| || | |||| ||| ||||||| Sbjct 77166 AGCAGCGTCTGATTTTTGCCAGCAAACAGCTGGGGGATGGCTGCACTCTCTCAGACTACA 77107 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTG 38462 ||||||| || || | ||||| ||||||||||| || Sbjct 77106 ACATCCAGAAAGAGTTCCCCCTGCACCTGGTGCTGCGTCTG 77066 >seq3163 Length=297541 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| || |||||||| || || || || |||||||| | || || || || Sbjct 215127 AAAATGCAAATTTTTGTAAAAACCCTAACAGGAAAGACCATCACTCTGGAGGTGGAACCC 215068 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | | | | |||| || || | || ||||| || || || | ||| Sbjct 215067 AGTGATACCATTGAGAATGTGAAAGCCAAGATTCAGGATAAAGAAGGCATCCCTCCTGAC 215008 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| ||||||| | || ||||| |||||||| || | ||||| || |||||| Sbjct 215007 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGACTAC 214948 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| | || |||||| | || || ||| |||| |||||| Sbjct 214947 AACATCCAGAAGGAGTCAACTCTGCATCTTGTTCTTCGTCTGAGGGGCGGC 214897 >seq3414 Length=315879 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || |||||||| | || ||| || ||| Sbjct 11170 ATGCAGATCTTTGTGAAGACCCTCACAGGTAAGACCATCACTCTTGAGGTCAAGCCCAGT 11229 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | |||| ||||||| ||||| ||||| || || | ||| | Sbjct 11230 GACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACAAG 11289 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| || ||||| ||||||| || | |||| ||| ||||||||| Sbjct 11290 CAGCGTCTGATTTTTGCCAGCAAATAGCTGGAGGATGGCTGCACTCTCTCAGACTACAAC 11349 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || ||| | ||||||||||| || | || ||| Sbjct 11350 ATCCAGAAAGAGTCCACTCTGTACCTGGTGCTGCGTCTGCGTGGTGGC 11397 >seq1059 Length=696884 Score = 109 bits (120), Expect = 5e-19 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||| | || || || || || ||||| ||||| ||||||| |||| |||||| ||| Sbjct 62233 ATGTAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCATTCTCGAGGTCGAGCCCAGT 62174 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | ||| | | |||| ||||||| ||||| ||||| | |||||| Sbjct 62173 GACCCATCGAAAATG-TCAAAGCCAAAATCCAAGACAAGGAGGGCA-------CGACCAG 62122 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| || |||||||||||||| || | ||||| ||| ||||||||| Sbjct 62121 CAGCGTCTGATTTTTGCCGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACAAC 62062 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGC 38457 ||||| || || | || |||| ||||||||| Sbjct 62061 ATCCAGAAAGAGTCCACCCTGCCCCTGGTGCTGC 62028 >seq1368 Length=2199528 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||| ||||| || |||||||| | || || || |||||||| | || || || || Sbjct 788680 AAAACACAAATTTTTGTAAAAACCGTAACAGGAAAGACCATCACTCTGGAGGTGGAACCC 788739 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | | | | |||| || || | || ||||| || || || | ||| Sbjct 788740 AGTGATACCATTGAGAATGTGAAAGGCAAGATTCAGGATAAAGAAGGCATCCCTCCTGAC 788799 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| ||||||| | || ||||| |||||||| || | ||||| || |||||| Sbjct 788800 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGTCGCACTCTTTCTGACTAC 788859 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || || | || |||||| | || || || |||| | |||| Sbjct 788860 AACATCCAGAAAGAGTCAACTCTGCATCTTGTTCTTTGTCTGAGGGCCGGC 788910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499762070600960