Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2716 123 1e-22 seq4996 96.9 1e-14 seq2091 96.9 1e-14 >seq2716 Length=930914 Score = 123 bits (136), Expect = 1e-22 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 |||||||| |||| |||| | || |||||| ||||| || |||||||| || ||||| Sbjct 424392 TATAAAGGAGAAAATAAAGCCTTCTATCCTGAGGAAATCTCTTCTATGGTGCTGACTAAG 424333 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTC-CAGTTACTGATGCAGTAATTACTGT 451335 ||||| || || || || | | |||| | | | ||||| |||| || || || || Sbjct 424332 ATGAAGGAGACTGCTGAGGCTTTT-TTGGGGCACACTGTTACCAATGCTGTGATCACAGT 424274 Query 451336 TCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGG 451395 || || ||||||||||| ||||||| || || || || ||||| || |||||| || Sbjct 424273 GCCAGCCTATTTCAATGACTCACAACGCCAGGCCACCAAGGATGCGGGTGTTATTGCAGG 424214 Query 451396 TTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 | || || || |||| || |||||||| ||||| ||||| Sbjct 424213 ACTCAACGTGCTAAGAATCATCAATGAACCCACAGCTGCTGC 424172 >seq4996 Length=305878 Score = 96.9 bits (106), Expect = 1e-14 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||| ||||| ||||| || |||| ||||||| |||||| | ||||||||||| Sbjct 12007 GCCACTAAGGATGCTGGACAAATATCTGGGCTAAATGTACTTCGAGTGATTAATGAACCC 12066 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 ||||| ||||||||||| ||||| |||| || ||| |||| Sbjct 12067 ACAGCTGCTGCTCTAGCCTATGGTCTAGACAAGTCAGAAGA 12107 >seq2091 Length=1438649 Score = 96.9 bits (106), Expect = 1e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| ||||||| || || |||||||||||||| || || ||||||||| Sbjct 371706 GTTACCCATGCAGTTGTTACTGTGCCAGCCTATTTCAATGATGCCCAGCGCCAAGCAACT 371647 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| | ||||| | | || || ||||| || Sbjct 371646 AAAGATGCTGGAACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 371594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974055429178952