Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2716 150 1e-30 seq3 122 7e-22 seq280 100 2e-15 seq2091 98.7 8e-15 >seq2716 Length=930914 Score = 150 bits (166), Expect = 1e-30 Identities = 931/1480 (63%), Gaps = 26/1480 (2%) Strand=Plus/Plus Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 517272 ||| || || || || || |||| |||| || ||||| | ||| || ||||| || Sbjct 423196 ATTGGTGATGGTGATCTTGTTGGCTTTGCCAGTGCTCTTATCGGTGGCCGTGACATTCAG 423255 Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 || || |||||||| | ||||| || || ||||| ||||| || || || | ||||| Sbjct 423256 GATGCCGTTGGCATCGATGTCAAAAGTCACCTCAATCTGAGGAACTCCCCTGGGTGCAGG 423315 Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392 ||||| || || | ||| ||||| ||| || ||| || | | || Sbjct 423316 AGGGATTCCAGTCAGGTCAAAGCGCCCCAGCAAATTGTTGTCTCGGGTCATGGCCCTCTC 423375 Query 517393 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 517452 |||||| | | ||||| || ||| || |||||||| || || ||||| | ||| Sbjct 423376 ACCCTCATATACCTGGATCAGGACCCCAGGCTGGTTATCTGAGTAGGTGGTAAAGA-TCT 423434 Query 517453 GGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTG 517511 | | | ||| || || || | || | | || | ||||| | || || | Sbjct 423435 GTGTCTGTTTGGTGGGGATGGTAGAATTACGTTTGATCAGGACAGTCATCACGCCCCCAG 423494 Query 517512 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 517571 ||||||| ||||| || || | |||| || || | | | | | || | |||| Sbjct 423495 CTGTTTCCAAACCTAGGGACAAGGGAGCCACGTCCAACAAAAGCAGGTCCTGTACCTTTT 423554 Query 517572 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 517631 || | | ||| | | ||| ||||| || | ||||| ||||| || || || |||| Sbjct 423555 CAGACTTGTCACCCATCAAAATCGCTGCCTGTACTGCAGCCCCATAGGCTACTGCCTCAT 423614 Query 517632 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT-T 517690 |||| || | | | || || | |||||| || | | || ||| ||| | Sbjct 423615 CAGGGTTGATGCTCTTGTTGAGCTCACGACCATTAAAGTAGTCCTGCAGTAGTC-TCTGT 423673 Query 517691 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCC 517750 ||||| || ||||| | || || || || || ||||| ||||| | | | ||||||| Sbjct 423674 ACCTTGGGGATACGGGTGGAGCCCCCTACCAAAACAATGTCATGGATTTTAGCTTTATCC 423733 Query 517751 AGTTTTGAATCCAATAAAACTTTTTCAACGGGTTC-AAG--ACCCGCTCTAAACAAGTCT 517807 | || | ||| | | | || || || || || ||| |||| |||||||||||| Sbjct 423734 ATCTTAGCATCACGCAGAGCCTTCTCCACAGGCTCCAAGGTACCC---CTAAACAAGTCT 423790 Query 517808 GAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAAC 517867 | ||| | ||||| || |||||| |||| | || | ||||| || || || Sbjct 423791 GCACACAACTCTTCAAACCGAGCTCTGGTAATGGATGTATAGAAGTCAATGCCCTCAAAT 423850 Query 517868 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 517927 | || || | || | | | || || || || || | | || || | || Sbjct 423851 AGGGAGTCGATCTCCAGGTTGGCCTGGGTGCTGGATGACAGGGTCCTCTTGGCCCTCTCG 423910 Query 517928 CATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTCAAATCTGTTTTATA 517983 || || || | || || | | || |||| | ||| |||| || | || | Sbjct 423911 CAGGCAGTGCGCAGCCTCCTCACAGCTCGCTTGTTCTGGCTGATG----TCCTTCTTGTG 423966 Query 517984 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 518043 || |||||||| || || || | | || | | || ||||| || || || || Sbjct 423967 CTTCCTCTTGAACTCCTCCACGAAGTGGCTCACCAACCTGTTGTCAAAGTCCTCCCCACC 424026 Query 518044 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 518103 || | || | || | || ||| | || | |||| ||||| || | || | || Sbjct 424027 CAGGTGGGTGTCCCCGGCAGTGGCTTTCACCTCAAAAATACCATCATCTATAGTTAGAAT 424086 Query 518104 AGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGTCT 518161 | |||||| || || ||||| | |||||| || || || | || | || || | Sbjct 424087 GGACACATCAAACGTACCTCCACCTAGATCAAAGATCAGGACGTGTCGCTCTCCATGACC 424146 Query 518162 TGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 | ||| ||| | ||| || |||| |||||||| || |||||||| || ||||| | Sbjct 424147 TCCTTT--ATCTAAACCGTAGGCAATGGCAGCAGCTGTGGGTTCATTGATGATTCTTAGC 424204 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 || || || || ||||| || ||||| || ||||| || | |||||| || || ||| Sbjct 424205 ACGTTGAGTCCTGCAATAACACCCGCATCCTTGGTGGCCTGGCGTTGTGAGTCATTGAAA 424264 Query 518282 TATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTT 518341 || || || || || || || |||| || || | || | | |||| || || Sbjct 424265 TAGGCTGGCACTGTGATCACAGCATTGGTAACAGTGTGCCCCAAAAAAGCCTCAGCAGTC 424324 Query 518342 TGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCA 518401 | ||||| ||| | | | ||| || || |||| || || | | || ||| Sbjct 424325 TCCTTCATCTTAGTCAGCACCATAGAAGAGATTTCCTCAGGATAGAAGGCTTTATTTTCT 424384 Query 518402 TTTTGATATGATACTTCAAAATAT--GGTTTATTACCAACATTAATAACTTTAAATGGCC 518459 || ||| || || ||| | | || || || ||||||| |||| ||| |||| Sbjct 424385 CCTTTATAGGACAC--CAACACCTTGGGCTTGCCCCCCTCATTAATCACTTGAAAAGGCC 424442 Query 518460 AGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 518519 | |||||||||||| || || | |||||||| | || || || || ||||| | Sbjct 424443 AAAGTTTCATATCTGACTGCACCACAGGATCATTAAATTTCCTTCCGATCAAACGTTTGG 424502 Query 518520 CATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA 518579 ||||||| | ||| || ||||| || || | || | ||||||||||| || || | Sbjct 424503 CATCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCTGCATCCCCTATGA 424562 Query 518580 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 518639 | |||| || || || || | || || || || ||||| || || || || || | Sbjct 424563 GTCGTTCGGTGTCGGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTGCCCTGGTCGTTGG 424622 Query 518640 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 | || || || || || || | || | || || ||||| Sbjct 424623 CGATGATCTCCACCTTGCCGTGCTGGAACACCCCCACACA 424662 >seq3 Length=4708640 Score = 122 bits (134), Expect = 7e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || |||||||||| ||||||||||||||| ||||| || ||||||| ||| Sbjct 2000168 TTTTTGTCTAGGCCATACGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTCAGTACA 2000109 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| |||||||||| || || || || | || || || ||||| || Sbjct 2000108 TTGAGGCCAGCAATGGTTCCTGCATCCTTGGTAGCCTGACGCTGAGAGTCATTAAAGTAC 2000049 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || ||||| | ||| |||| Sbjct 2000048 GCTGGTACAGTGACAACAGCAT 2000027 Score = 122 bits (134), Expect = 7e-22 Identities = 360/550 (65%), Gaps = 10/550 (2%) Strand=Plus/Minus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| |||||||| |||||||| |||| | | || | || ||| |||||||| Sbjct 2000815 GCACCATAAGCAACAGCCTCATCAGGGTTAATGCTCTTGTTCAATTCTTTTCCATTGAAG 2000756 Query 517670 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 |||| ||| |||| ||| | |||||||||||| | || || || || | ||||| Sbjct 2000755 AAATCCTGAAGCAGTT-TCTGAATCTTAGGAATACGGGTAGAGCCGCCCACGAGAACAAT 2000697 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 ||||| | ||| || || || || || | |||| | |||| || || || || || Sbjct 2000696 GTCATGTATCTGAGACTTGTCTAGCTTGGCATCCCTCAGGGCTTTCTCCACAGGGTCCAG 2000637 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 517848 | | | || | ||| | | | |||||| ||| ||| | |||| | | || Sbjct 2000636 AGTGCCACGGAAGAGGTCAGCATTCAATTCTTCAAATCGAGCACGGGTAATGGAGGTATA 2000577 Query 517849 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 517908 | | || |||||||| | | ||| |||| || || | | || || || || || Sbjct 2000576 AAAGTCGATTCCTTCATAGAGAGAGTCAATCTCGATACTGGCCTGGGTGCTGGAGGACAG 2000517 Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATT 517964 | |||||| ||||||||||| || || | || | || | || ||| | || | | Sbjct 2000516 AGTACGTTTTGCACGTTCACAAGCAGTACGGAGGCGACGAACAGCCCTCTTGTTCTCAGT 2000457 Query 517965 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGAT 518024 ||| || | |||| ||| | |||||| || ||| | | | || | | | Sbjct 2000456 GAT----GTCCTTCTTATGTTTGCGCTTGAACTCAGCAATAAAGTGATTCACCATCCTGT 2000401 Query 518025 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 518084 ||||||||||||| || ||||| | |||| ||| | || | | | || | || | || Sbjct 2000400 TATCAAAATCTTCTCCACCCAAGTGGGTATCTCCAGCTGTGGATTTGACCTCAAAGATTC 2000341 Query 518085 CATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 518144 ||||||||| || | | | ||||| || ||||| |||| |||||| || || | Sbjct 2000340 CATCTTCAATAGTGAGGATTGACACATCGAAAGTGCCACCTCCCAAATCAAAGATCAGCA 2000281 Query 518145 CATTCATTTC 518154 |||| |||| Sbjct 2000280 CATTTCTTTC 2000271 >seq280 Length=2099476 Score = 100 bits (110), Expect = 2e-15 Identities = 226/327 (69%), Gaps = 11/327 (3%) Strand=Plus/Plus Query 517505 CCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGA 517564 ||||| || ||||| | |||||| ||||||||||||||||| | || | | || ||| Sbjct 1686900 CCACCAGCAGTTTCCATACCAAGGGAAAGAGGAGTGACATCCAAGAGCAGCAAATCTTG- 1686958 Query 517565 AGTTTTTCATCAG-TTTG-ACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 517622 ||||||| |||| |||| |||| | || ||||| || | || |||||||| |||| Sbjct 1686959 AGTTTTT--TCAGATTTGCACCAGGTAAGATGGCTGCCTGGACAGATGCACCATAAGCAA 1687016 Query 517623 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGA 517681 || |||| | || | | | |||| | ||| |||||||| |||| |||||| | Sbjct 1687017 TAGTCTCATTGGAGTTCATGCTCTTCTTTAAGTCTTTCCCATTGAATAAATCTTGAAA-A 1687075 Query 517682 AGTTGTCT-TACCTTAGGAATACGAGAT-GATCCTCCAACTAATACAATTTCATGCACCT 517739 |||| ||| | ||| | |||| ||| | || || || || | ||||| ||||| | || Sbjct 1687076 AGTT-TCTGAATCTTGGCAATA-GAGGTAGAACCGCCCACCAGGACAATGTCATGGATCT 1687133 Query 517740 GTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAA 517799 |||| || || | || | |||| | |||| || || || || ||| | | | Sbjct 1687134 GTGACTTGTCTATGTTGGCATCCCTAAGGGCTTTCTCCACAGGGTCCAGAGTGCCACAGA 1687193 Query 517800 ACAAGTCTGAACAAAGTTCTTCGAATT 517826 ||| ||| | | |||||||| |||| Sbjct 1687194 ACAGGTCAGCATTCAGTTCTTCAAATT 1687220 >seq2091 Length=1438649 Score = 98.7 bits (108), Expect = 8e-15 Identities = 200/295 (68%), Gaps = 14/295 (5%) Strand=Plus/Plus Query 517093 ATAATTTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTTCTTGTTATCTGCTTCTTC 517152 |||| |||| ||||||||| ||| ||||| | || ||| || ||| | || | Sbjct 369719 ATAACTTTCCAATTCATTTCTAGTATCAATTCGTTCCTTGAGCTTTTTGTCTTCCTCAGC 369778 Query 517153 AAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCT----TCAGAGAATCTTCCGC 517208 ||||| || || || ||| ||| || ||||||| || ||||| || || Sbjct 369779 AAATTTTTCGGCATCATTAACCATCCTTTCAATTTCTTCAGGTGTCAGACGATTTT---- 369834 Query 517209 GATTATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCA 517265 | | ||| ||||| || || || || |||||| ||| || || | || |||| Sbjct 369835 GGTCATTGGTAATTGTGATCTTATT---TTTGTTCCCTGTACCCTTGTCTTCAGCTGTCA 369891 Query 517266 CATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCT 517325 | |||||| ||||| |||| | ||||| |||||||||||||| ||||| || | Sbjct 369892 CTCGAAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATTTGTGGGACACCACGGG 369951 Query 517326 GAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 517380 |||||||||| || || || || ||| || |||||| || ||| ||||| || Sbjct 369952 GAGCAGGTGGAATTCCAGTCAGATCAAACGTACCCAGAAGATGATTGTCTTTTGT 370006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777562447323964