Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq1338 100 2e-16 >seq1338 Length=782664 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 359 TACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTGCCCACTTCTG 418 |||| | ||||| ||||| ||||| | | || || | ||||||||||||||||| Sbjct 80079 TACACGGCAGGTGTATTTCTGCTCCTCTCCAGAGGGCACCACCATGGCTGCCCACTTCTG 80020 Query 419 AAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAGTCAGTTGCTC 478 || |||||||| || || || ||||| ||||| || ||| | | ||| | | ||| Sbjct 80019 GAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCCATGTCCTGGGTCTGGTCCTC 79960 Query 479 TGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGGCCCAACATTT 538 || || ||||| || | ||| || ||||| || |||||||| |||||| || | Sbjct 79959 CCCTTCCCGCTGCCAGGTCAGGGTGATCTCCGCCGGGTAGAAGCCCAGGGCCCAGCACCT 79900 Query 539 TAGTGTTACTTGACGGTCAG 558 ||||| || | |||||||| Sbjct 79899 CAGTGTAACCTCACGGTCAG 79880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397428745444464