Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3163 150 4e-31 seq1368 145 2e-29 seq2502 136 9e-27 seq875 123 6e-23 seq350 102 2e-16 seq3414 91.5 3e-13 >seq3163 Length=297541 Score = 150 bits (166), Expect = 4e-31 Identities = 163/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || ||||| ||||| || || || ||||| || | |||||| | ||||| || Sbjct 214915 AACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTC 214974 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| ||||| ||||| || | || ||||| ||||| ||||||||||| || || Sbjct 214975 CAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTG 215034 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 ||| || || || ||||||||||| || ||| |||||| || || || | || Sbjct 215035 AATCTTGGCTTTCACATTCTCAATGGTATC---ACTGGGTTCCACCTCCAGAGTGATGGT 215091 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||||||| | |||||||| || | |||||||| Sbjct 215092 CTTTCCTGTTAGGGTTTTTACAAAAATTTGCATTT 215126 >seq1368 Length=2199528 Score = 145 bits (160), Expect = 2e-29 Identities = 159/210 (76%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || ||||| |||||||| || || ||||| || | |||||| | ||||| || Sbjct 788892 AACAAGATGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCCTC 788833 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| ||||| ||||| || | || ||||| ||||| ||||||||||| || || Sbjct 788832 CAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTG 788773 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 ||| || || || ||||||||||| || ||| |||||| || || || | || Sbjct 788772 AATCTTGCCTTTCACATTCTCAATGGTATC---ACTGGGTTCCACCTCCAGAGTGATGGT 788716 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTG 195137 ||||||||| | |||||||| || | ||| Sbjct 788715 CTTTCCTGTTACGGTTTTTACAAAAATTTG 788686 >seq2502 Length=682766 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| |||||||| ||||| || || ||||| || | || || | |||||||| Sbjct 414238 ACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 414179 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || || || | | || ||||| |||||||||||||| |||||||| Sbjct 414178 AGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGG 414119 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || || |||||||||||| |||||||| ||| || ||||||||||| | ||| Sbjct 414118 ATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCTACTTCAAGGGTGATTGTC 414062 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 414061 TTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 414030 >seq875 Length=1260434 Score = 123 bits (136), Expect = 6e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTC 194980 ||||||||| ||||| |||||||| ||||| |||||||| || ||||| | |||| || | Sbjct 610292 GAGTCTCAACACAAGATGAAGAGTCGACTCCTTTTGAATGTTATAATCTGACAAG-GTCC 610350 Query 194981 TCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTT 195040 |||||||| || |||| || || || | || | || | || |||||||| |||| Sbjct 610351 GTCCATCTTCCAGTTGCTGGCCAGCAAACAGCAGCCTCTGCTAATCAGGAGGAATCCCTT 610410 Query 195041 CTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGG 195100 | || | || || | ||| || || || |||||||||||| ||| || | |||| Sbjct 610411 CCTTACCCTGGATCTCGGCCTTTACATTTTCTATGGTGTCCGAAGGTTCAACCTTGAGGG 610470 Query 195101 TAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||||||||| | || || ||||| | ||||| Sbjct 610471 CAACGGTCTTTCCTGTGAGGGTCTTCACGAAAATCTGCAT 610510 >seq350 Length=1614380 Score = 102 bits (112), Expect = 2e-16 Identities = 154/216 (71%), Gaps = 11/216 (5%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || |||| || ||| | | || ||||| || ||||| ||||| || Sbjct 327605 AACAAGATGCCGAGTCGAGTCTCTCCGGATGTTGTAGTC----AGAGTGTGACCATCCTC 327660 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| ||||| ||||| || | || ||||| ||||| |||||||||| || || Sbjct 327661 CAGCTGCTTGCCTGCAAAGATGAGCCTGTGCTGGTCAGGAGGGGTGCCTTCTTTATCCTG 327720 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 ||| || || || ||||| ||||| || ||| || ||| || | || || || Sbjct 327721 AATCTTGGCTTTCACATTCTCGATGGTATC---ACTGGGTTTCACCTCCACAGTGACGGT 327777 Query 195108 CTTTCCTGTCAAAG-TTTTTACGAACACTTGCATTT 195142 | ||||||| | | |||||||||| | |||||||| Sbjct 327778 CCTTCCTGTTAGGGGTTTTTACGAAAATTTGCATTT 327813 >seq3414 Length=315879 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||| |||||||||||||| || || ||||| || | ||||| | ||||| || Sbjct 11378 ACCAGGTACAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCTCC 11319 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||| || | || || || || || || | ||| || || ||||| || |||||||| Sbjct 11318 AGCTATTTGCTGGCAAAAATCAGACGCTGCTTGTCAGGTGGGATGCCCTCCTTGTCTTGG 11259 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 ||||| ||||| || || ||||||| | | ||| || ||||| || | |||| Sbjct 11258 ATTTTGGCTTTGACATTTTCGATGGTGTCACTGGGCTT--GACCTCAAGAGTGATGGTCT 11201 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| | || || || || | ||||| Sbjct 11200 TACCTGTGAGGGTCTTCACAAAGATCTGCAT 11170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108547744483298