Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2502 131 1e-25 seq2217 111 1e-19 seq1059 111 1e-19 seq3414 102 5e-17 seq336 96.9 2e-15 >seq2502 Length=682766 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | || |||| ||| | ||| ||||||||| ||||| ||||| || Sbjct 414256 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 414197 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| |||| ||||||||||| || ||||| || | | |||||||| | || Sbjct 414196 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGAGGA 414137 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| |||||| | || | |||| || ||| || Sbjct 414136 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCTACT 414077 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| || || || ||||| || |||||||| ||||||||||| Sbjct 414076 TCAAGGGTGATTGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 414030 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||| ||||||||| ||||| ||||| || | | | || |||| || Sbjct 412779 AACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTCCGACCATCTTC 412720 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||||||| || ||||| || | | |||||||| | || | || |||||||| Sbjct 412719 CAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTG 412660 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| ||||| || || || | |||| || ||| || || | ||| |||||| Sbjct 412659 GATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTT 412602 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| | || || |||||||||||||| Sbjct 412601 TTACCCGTTAAGGTTTTTACAAAGATCTGCAT 412570 >seq2217 Length=590369 Score = 111 bits (122), Expect = 1e-19 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || || | | |||| |||||||||| | |||||| Sbjct 77094 TCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCCCCAGCTGTTTGCTGGCAAAA 77153 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| || || |||||| | Sbjct 77154 ATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTT 77213 Query 34911 GCTATCGAT-TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || ||| |||| || ||| || |||| || ||||| || || ||||| |||||||| Sbjct 77214 TCGAT-GATGTCACTGGGCTCGACCTCGAGAGTGATGGTCTTGCCTGTGAGGGTCTTCAC 77272 Query 34970 AAAGATCTGC 34979 |||||||||| Sbjct 77273 AAAGATCTGC 77282 >seq1059 Length=696884 Score = 111 bits (122), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 14/194 (7%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || || | || |||| ||||||||||| |||||||| Sbjct 62051 TCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAAA 62110 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| || ||||||||||| || || |||||| || Sbjct 62111 ATCAGACGCTGCTGGTCGTG-------CCCTCCTTGTCTTGGATTTTGGCTTTGAC--AT 62161 Query 34911 GCTATCGAT---TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | ||||| |||| || ||| || |||| | ||||| || || ||||| |||||| Sbjct 62162 --TTTCGATGGGTCACTGGGCTCGACCTCGAGAATGATGGTCTTGCCTGTGAGGGTCTTC 62219 Query 34968 ACAAAGATCTGCAT 34981 |||||||||| ||| Sbjct 62220 ACAAAGATCTACAT 62233 >seq3414 Length=315879 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || || | | |||| ||||||| ||| | |||||| Sbjct 11360 TCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCTCCAGCTATTTGCTGGCAAAA 11301 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||| ||| | || | ||||||||||| || || |||||| | Sbjct 11300 ATCAGACGCTGCTTGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTT 11241 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || || || || | || ||||| || || ||||| ||||||||| Sbjct 11240 TCGATGGTGTCACTGGGCTTGACCTCAAGAGTGATGGTCTTACCTGTGAGGGTCTTCACA 11181 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 11180 AAGATCTGCAT 11170 >seq336 Length=3219352 Score = 96.9 bits (106), Expect = 2e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 ||||||| ||| | |||||||| || || | |||| ||||||||| | | |||||| | Sbjct 1022847 CTTTCTGGATGCTGTAGTCCGAGAGACTGTGGCCATCCTCCAGCTGTCTGCTGGCAAAAA 1022788 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | || || ||||||| | | | ||||||||||| || || |||||| || Sbjct 1022787 TCAGACGCCGCTGGTCAGGTGAGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTTG 1022728 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || || |||| || ||| | || | || |||| | |||| ||||| ||| |||||| Sbjct 1022727 CAATGGAATCACTGGGCTCGAACTCCAGAGTGATGG-TCTTCCTGTGAGGGTC-TCACAA 1022670 Query 34972 AGATCTGCAT 34981 |||||||||| Sbjct 1022669 AGATCTGCAT 1022660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324373683528432