Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1287 116 4e-21 seq58 102 9e-17 seq51 102 9e-17 >seq1287 Length=728452 Score = 116 bits (128), Expect = 4e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || |||| |||||| ||||| || | |||||||||| ||||| ||| | Sbjct 541987 CCTCATCTCTGCTAATCAGTTCATTGGAAAAGGTGAGGCCAGGCATCAATCCTCGTTTCT 541928 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| | |||||||| |||||||| | Sbjct 541927 TGAGCCAGAATATCGATGCAAAGGAACCAGAAAAGAAGACTCCTTCTACAGCTGCAAAGG 541868 Query 19103 CAAC 19106 | || Sbjct 541867 CTAC 541864 Score = 100 bits (110), Expect = 3e-16 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || | | ||| |||||||| Sbjct 543580 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGGCTGGACATCACTCCCATC 543523 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 543522 CTCTGATACTCGCCCACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 543463 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 543462 TCCATAAAGTCAAATGGATTTTCTAC 543437 >seq58 Length=3827145 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | ||||| || || ||||| ||||| || || Sbjct 3738278 TGAAATTCTCCTGACAAGACTCTGCGAGTGTATATGTTGCTCGTATACGGTTCAATGGAC 3738219 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | |||||||||||||| || |||||||| | |||| | ||| || Sbjct 3738218 TCATTATTCCCCAGTATTTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGTAAACTG 3738159 Query 47448 TTTCTTACTCCATA 47461 |||||||| || || Sbjct 3738158 TTTCTTACACCGTA 3738145 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| |||||||| || | ||| ||| |||| || | |||||| || | Sbjct 3741012 TCCAGCCATAGAAGTGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 3740953 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | ||||| || || |||||||| || || ||||| ||||||||||| | | | | Sbjct 3740952 TCAGAGACTGGCTTTGATCAATGAAGGCCCCTCTTTCAGCTGCCATCTTGAGTACAGTTT 3740893 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 |||| | || ||||| ||||| ||||| | ||| || | ||| || || Sbjct 3740892 TTTGAGAGATTTCCCACACTGTCTTATACAGTTGCTTCAAGTCATCAGG 3740844 >seq51 Length=3716683 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || |||| || || | |||||| || || || | |||||||| || ||||| || ||| Sbjct 836208 TCATCTCGGCTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 836149 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| |||||||| ||||| || || ||||| || ||||| || Sbjct 836148 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCCTCTACAGCAGCAAAGGCT 836089 Query 19105 ACTAGTCTTTCTCC 19118 || | ||||| || Sbjct 836088 ACGATCCTTTCCCC 836075 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| |||||| |||||||| ||||| || ||||| || ||| |||| Sbjct 849225 TGATACTCTGAAACTCGTTTTTCGAAGAAATTTGTTTTCCCTTCTAAAGAAATATTTTCC 849166 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 849165 ATAAAATCAAAGGGATTTT 849147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561647210306160