Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2716 170 2e-36 seq3 122 7e-22 seq3163 109 4e-18 seq1368 100 2e-15 seq2091 96.9 3e-14 seq6 93.3 3e-13 >seq2716 Length=930914 Score = 170 bits (188), Expect = 2e-36 Identities = 402/600 (67%), Gaps = 13/600 (2%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || | || ||||| || ||||| || || | || | || || Sbjct 424695 GCCATCGGCATCGACCTGGGCACCACCTACTCGTGTGTGGGGGTGTTCCAGCACGGCAAG 424636 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || ||||| || || || ||| | || || || || || | ||||| Sbjct 424635 GTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTACGTGGCCTTCACC 424576 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACC 550168 || || |||| | | || |||||||| || | || ||||| || ||||| Sbjct 424575 GACACCGAACGACTCATAGGGGATGCAGCCAAGAACCAGGTAGCCA-TG--AATCCCCAG 424519 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || ||| | |||||||| |||||||| || ||||| | ||||||||| | || ||| Sbjct 424518 AACACTGTCTTTGATGCCAAACGTTTGATCGGAAGGAAATTTAATGATCCTGTGGTGCAG 424459 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA--TATTG 550286 |||||||||| | ||||||||| ||| | |||||| || || || | | ||| Sbjct 424458 TCAGATATGAAACTTTGGCCTTTTCAAGTGATTAATGAGGGGGGCAAGCCCAAGGTGTTG 424399 Query 550287 AAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 | | || || ||||| |||| || | || || |||| || |||||||| Sbjct 424398 GTG-TCCT-ATAAAGGAGAAAATAAAGCCTTCTATCCTGAGGAAATCTCTTCTATGGTGC 424341 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | | || ||||| | || || |||||| | || || ||||| |||| || | Sbjct 424340 TGACTAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGGCACACTGTTACCAATGCTGTGA 424281 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || || ||||| ||||| |||||||||||||| || || || || ||||| || || Sbjct 424280 TCACAGTGCCAGCCTATTTCAATGACTCACAACGCCAGGCCACCAAGGATGCGGGTGTTA 424221 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 |||| ||||| || || || | || ||||||||||| || |||||||| |||| || | Sbjct 424220 TTGCAGGACTCAACGTGCTAAGAATCATCAATGAACCCACAGCTGCTGCCATTGCCTACG 424161 Query 550527 GACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT---TGTGGAGGTA 550583 | | |||||| | || ||| | | || || ||||||||| ||||||||| Sbjct 424160 GTTTAGATAAAGGAGGTCATGGAGAGCGACACGTCCTGATCTTTGATCTAGGTGGAGGTA 424101 >seq3 Length=4708640 Score = 122 bits (134), Expect = 7e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | ||||||||||| || ||||||||||| || ||||| ||||| Sbjct 2000020 GTTACCAATGCTGTTGTCACTGTACCAGCGTACTTTAATGACTCTCAGCGTCAGGCTACC 2000079 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || ||||| ||| |||||||| || ||||| || | || |||||||| || |||||| Sbjct 2000080 AAGGATGCAGGAACCATTGCTGGCCTCAATGTACTGAGAATCATCAATGAGCCAACTGCT 2000139 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| |||| ||||| || || ||| Sbjct 2000140 GCTGCTATTGCGTATGGCCTAGACAAA 2000166 Score = 111 bits (122), Expect = 1e-18 Identities = 233/345 (68%), Gaps = 2/345 (1%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 ||| ||||||| || | |||||||| ||| | || ||||| |||| || || | || Sbjct 2000472 GCTGTTCGTCGCCTCCGTACTGCTTGTGAACGTGCAAAACGTACTCTGTCCTCCAGCACC 2000531 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 || ||| ||| || | || || | | ||| ||||| || | | |||| | ||| | Sbjct 2000532 CAGGCCAGTATCGAGATTGACTCTCTCTATGAAGGAATCGACTTTTATACCTCCATTACC 2000591 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 | || ||||||||| | | |||| ||||| | || | || || || || Sbjct 2000592 CGTGCTCGATTTGAAGAATTGAATGCTGACCTCTTCCGTGGCACTCTGGACCCTGTGGAG 2000651 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 ||| | || ||| | ||| | || || || | ||||||| ||||| || || || Sbjct 2000652 AAAGCCCTGAGGGATGCCAAGCTAGACAAGTCTCAGATACATGACATTGTTCTCGTGGGC 2000711 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAA 552193 || ||||| | |||||||| |||| || || || || || || |||||| ||| | Sbjct 2000712 GGCTCTACCCGTATTCCTAAGATTCAGAAACTGCTTCAGGATTTCTT-CAATGGAAAAGA 2000770 Query 552194 ATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238 ||| || | || |||| || |||||||||||||| |||||||| Sbjct 2000771 ATTGAACAAGAGCATTAACCCTGATGAGGCTGTTGCTTATGGTGC 2000815 >seq3163 Length=297541 Score = 109 bits (120), Expect = 4e-18 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| ||||| || |||||||| || || ||| | ||| || ||||| |||| ||| Sbjct 214903 CCTCAGACGAAGAACAAGATGCAGAGTTGACTCCTTCTGG--ATGTTGTAGTCAGAAAGA 214960 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | ||| || || || || || ||||| || || || ||||| |||||||| || Sbjct 214961 GTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATG 215020 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 ||||||||||| ||||| || ||| || |||||| |||||| || | | || || Sbjct 215021 CCTTCTTTATCCTGAATCTTGGCTTTCACATTCTCAATGGTATCACTG-GGTTCCACCTC 215079 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| | || || || || || ||||| || ||||||||||| Sbjct 215080 CAGAGTGATGGTCTTTCCTGTTAGGGTTTTTACAAAAATTTGCAT 215124 >seq1368 Length=2199528 Score = 100 bits (110), Expect = 2e-15 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| |||| || |||||||| || || ||| | | ||| || ||||| |||| ||| Sbjct 788904 CCTCAGACAAAGAACAAGATGCAGAGTTGACTCTTTCTGG--ATGTTGTAGTCAGAAAGA 788847 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | ||| || || || || || ||||| || || || ||||| |||||||| || Sbjct 788846 GTGCGACCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATG 788787 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 ||||||||||| ||||| || ||| || |||||| |||||| || | | || || Sbjct 788786 CCTTCTTTATCCTGAATCTTGCCTTTCACATTCTCAATGGTATCACTG-GGTTCCACCTC 788728 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 ||||| | || || || || | ||||| || |||||||| Sbjct 788727 CAGAGTGATGGTCTTTCCTGTTACGGTTTTTACAAAAATTTG 788686 >seq2091 Length=1438649 Score = 96.9 bits (106), Expect = 3e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | ||||| ||||| ||||| ||||| | || || ||||| ||| Sbjct 371706 GTTACCCATGCAGTTGTTACTGTGCCAGCCTATTTCAATGATGCCCAGCGCCAAGCAACT 371647 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||||||| |||||||||||| ||||| | | || |||||||| || Sbjct 371646 AAAGATGCTGGAACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 371594 >seq6 Length=3379349 Score = 93.3 bits (102), Expect = 3e-13 Identities = 168/243 (69%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 552112 TACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATG-TTA 552170 ||||| | ||||| || || ||||| ||||| ||||| || |||| || || || Sbjct 1365609 TACATCACATTGTCCTGGTGGGTGGCTCTACCCATATTCCCAAGATTCAGGAGCTGCTTC 1365550 Query 552171 AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCC 552230 || || || ||| || ||| |||| || | || ||||| || ||||||||||||| Sbjct 1365549 AGGATTTCTT-CAACGGAAAAGAATTGAACAAGAGCGTTAACCCTGATGAGGCTGTTGGT 1365491 Query 552231 TATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAAT 552290 |||||||| || | || ||||| | |||| ||| | | |||||| | ||| | Sbjct 1365490 TATGGTGCAGCTCTCCAGGCAGCCTTCTTTTCAGGAGACAAATCTGAAAATGTTCAAGAC 1365431 Query 552291 ATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATG 552350 | | || ||| ||| || |||| || |||||| | ||||| | ||| ||| | ||| Sbjct 1365430 TTGCTGCTCTTAGGTGTCGCTTCTCTTTCACTTGGTATTGAAACGGCTGGTGGTGTCATG 1365371 Query 552351 ACT 552353 ||| Sbjct 1365370 ACT 1365368 Score = 93.3 bits (102), Expect = 3e-13 Identities = 157/226 (69%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 ||||| ||||| | || ||| ||||| || | | || |||||| || | | | Sbjct 1366546 TGTGTGGGTGTCTTCCAGCCTGGAAAAGTGGAGACAGTGGCAGGTGATCAGGGCAGCCCA 1366487 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || || ||| || ||||| |||| || || ||||| | || | |||||||| ||||| Sbjct 1366486 ACCACCCCAGCT-ATGTTGCTTTTACTGATACTGAGCGATTGATCGGTGATGCTGCAAAG 1366428 Query 550145 TATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGA 550204 |||||| || ||||| || || || ||||| ||| || ||| | |||| | || Sbjct 1366427 AATCAAGTAGCTATGAATCCCACTAACACAGTTTTTTGTGCCAAGCGTCTGATTGAATGA 1366368 Query 550205 AGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTT 550250 || ||| ||||| ||| ||| | |||||||||||||||||| Sbjct 1366367 AGGTTTGATGATGTTGTTGTCCAGTCTTATATGAAGCATTGGCCTT 1366322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4025821805000060