Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq3414 118 1e-21 seq17363 91.5 2e-13 >seq3414 Length=315879 Score = 118 bits (130), Expect = 1e-21 Identities = 206/296 (70%), Gaps = 4/296 (1%) Strand=Plus/Minus Query 1908 GTGAATGGGGTGCTCGGGGAGTCCGTAACACTGCCCCTGGAATTTCCCGCGGGCGAGAAG 1967 ||||| ||||| || || ||||| ||||| || ||| |||| ||||| || | |||||| Sbjct 201107 GTGAACGGGGTTCTGGGAGAGTCAGTAACTCTTCCCTTGGAGTTTCCTGCAGAAGAGAAG 201048 Query 1968 ATCAAGTCCATCACCTGGCACTACAACGGCACCTCCATCGCCTTTATTGCCCCCTCGGAG 2027 || | ||||||||||||| |||| || || || ||| ||||||| | || || Sbjct 201047 ATTACTTCCATCACCTGGCTACACAATGGAACATCTATCACCTTTAT--ACAGCTAAAAG 200990 Query 2028 -GCCAAGAGC-CCCCAGATCCACCTAACCAATCCGAAACTGGGCAAGCGACTCAACTTCA 2085 || || | || || || || || | || |||| | | | ||||| ||||| | Sbjct 200989 AAACAGGATCTCCACATATTTACACGACTGACCCCAAACGGAGAGAACGACTGAACTTTA 200930 Query 2086 CGCAGTCCTACTCCCTACAACTGAGCAACCTAGAGATGGAAGACACCGGGTCCTACAGTG 2145 | | ||||||||| | || || |||||||| ||||||||||| || | ||| || Sbjct 200929 CCCCATCCTACTCCTTGCAGCTCAGCAACCTGACAATGGAAGACACAGGCTGTTACCATG 200870 Query 2146 CCCTGATGTCCTCCGAGACCACAGTTAACGTTTCCAGCTACACGCTGAGGATCTTC 2201 ||| || | |||| |||||| | | || | || ||||| |||||||| ||| Sbjct 200869 CCCAGAAGACCTCAGAGACCTCTGCAAAAATATCGTTTTACACTCTGAGGATATTC 200814 >seq17363 Length=65889 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 |||| || ||||| |||| |||||||||||| |||||||||||| || || || Sbjct 22856 GGTAGCCCCTCATGCCACACGTGACATGTGTATCTCTGCTCTTCTCCAGAGGGCACCACC 22915 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| |||| || || || ||||| || || || || | || || | |||| || Sbjct 22916 ACAGCTGCCCACTTCTGGAAGGTCCCGTCCCCTGCAGGCCTGGTCTCCACAAGCTCCGTG 22975 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 || || | || || || || || || | ||| || | | || || ||||| || || Sbjct 22976 TCCTGGGTCTGGTCCTCCCCATCCCGCTGCCAGGTCAGGGTGATCTCTGCCGGGTAGAAG 23035 Query 14352 CCCAAAGCCCAGCACCGTAAAGTAGTCTCGTGA 14384 |||| |||||||||| | ||| ||||||| Sbjct 23036 CCCATGGCCCAGCACCTCAGGGTAACCTCGTGA 23068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628766448368240