Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2239 123 2e-23 seq768 91.5 1e-13 >seq2239 Length=279090 Score = 123 bits (136), Expect = 2e-23 Identities = 126/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| || || |||||| | ||||| || | ||||||||| ||||| || ||| Sbjct 219249 AGGCCCGTGATATGTGCAATCATGCAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGT 219190 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC-GTCGCT 29987 ||||| || |||||||| || ||||||||||| ||||| || || ||||| || |||| Sbjct 219189 ACCCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCGC- 219131 Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 ||| || ||||| || | || ||||| ||||| || ||||| Sbjct 219130 CACATAGAACTGGCAAAGGGCATGGCAGGGAGGCAGTGCCAT 219089 Score = 89.7 bits (98), Expect = 4e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 |||| || | || ||||| || |||||||||||||| || || || || || || | | Sbjct 215774 TCATATCTTTATATTCTGCACCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAAT 215715 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 |||| ||||| | | ||| ||| ||||||||||||||| || | || || | Sbjct 215714 CTCCTTCTTCTCGGGCAGAGAATCCCAGGCTGTCCAAAAAGTCTCGAGATGCATTAGCAT 215655 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||||||| || ||||| || || ||||||| || ||||| || Sbjct 215654 CCCAGATCTTCACTCCCTTTGAAGACAGTTCTTTGGCATTGGTGGATCC 215606 >seq768 Length=1314110 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || || ||| ||| |||||||||||| || || Sbjct 190572 TTGAGTTCTCTACTGAGAACTAAATTAATTCTATCTTTCAAAGGTCTATTCTTCTCAGGA 190631 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| || ||||| ||||||| ||||| || ||| Sbjct 190632 ATGGAGAACCAGGTCTTCCTCCCCATAATCACCAAATTCTGTTTACCT 190679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408290442106262