Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1691 168 1e-36 seq4129 122 2e-22 seq58 107 4e-18 seq51 93.3 8e-14 >seq1691 Length=1117404 Score = 168 bits (186), Expect = 1e-36 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| || || | || | ||| || ||||| |||||| || ||||||||||| Sbjct 176777 AGCAGCTGGCAACCGTTGCTGACGTGGGTCATGACCTTCTGTTTAAGCTGGGCCACCTGC 176718 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 |||| || | | || || || ||||| || || || || | ||||||| |||||| Sbjct 176717 TCCCTGAGGAGGCCGGCCGTGTTTGACAGCCCCGCATTCTCGGCCTTGAGCGTCTTCACC 176658 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || ||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 176657 TTGTCCTCCAAGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGA 176598 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 ||||||| || | ||| || ||| |||||||||| |||||||| ||||||| ||| || Sbjct 176597 CGGTTCCTCAGCCGCTTGCGCTCCACCTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 176538 Query 241625 GAC 241627 ||| Sbjct 176537 GAC 176535 >seq4129 Length=634858 Score = 122 bits (134), Expect = 2e-22 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGAC--GCGGTATTGGACA 241472 ||||||| ||| ||||| || |||||||| || ||||| | ||| || || | || Sbjct 78844 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCA--GACTGGCCGTGGACGCCA 78787 Query 241473 GTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCA 241532 | | | ||| | ||| ||| |||||| |||||||| || |||| ||| || |||| Sbjct 78786 GCTCCGTGTTCTGGCTCTTAAGCGTCTTCACCTTCTCCTCGAGGCGCGAGATCCGCTCCA 78727 Query 241533 GTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCT 241592 | |||||| |||||| |||| ||| || | ||| || || || | || ||||| |||| Sbjct 78726 GCTTGCGCTTGCGGCACTTGGAGGCGGCAATGCGATTGCGCAGCCGTTTGCGTTCTGCCT 78667 Query 241593 TGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||||| ||||| ||||||||||| || ||| Sbjct 78666 TGATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 78632 >seq58 Length=3827145 Score = 107 bits (118), Expect = 4e-18 Identities = 101/125 (81%), Gaps = 4/125 (3%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| || || |||||||||||||||||| ||| || ||||||||||| ||| Sbjct 3728831 GTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGG 3728772 Query 213588 TTTGACT-TTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCT 213645 || ||| || || | || ||||| |||||||||||||| |||| ||| |||||| || Sbjct 3728771 TT--ACTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTCCCTGTCTCTGTCT 3728714 Query 213646 GGGAC 213650 | ||| Sbjct 3728713 GAGAC 3728709 >seq51 Length=3716683 Score = 93.3 bits (102), Expect = 8e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212 |||| || ||||||||||| | |||||||| ||| |||||||| | || |||| | Sbjct 836210 CTTCATCTCGGCTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 836151 Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272 | |||||||| || || || ||||| ||||||||||| || ||||| || || || || | Sbjct 836150 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCCTCTACAGCAGCAAAGG 836091 Query 48273 C 48273 | Sbjct 836090 C 836090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930767848552960