Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq40669 354 2e-93 seq41696 203 9e-48 seq43227 113 1e-20 seq41690 111 4e-20 seq45266 107 5e-19 seq41688 107 5e-19 seq58212 95.1 3e-15 seq40944 87.8 5e-13 >seq40669 Length=879 Score = 354 bits (392), Expect = 2e-93 Identities = 280/336 (83%), Gaps = 0/336 (0%) Strand=Plus/Minus Query 6891 ACTGGGTGCAGTCGGGGGATCCGGCGCGCGAATTCACCATGATTCAGTCAGCTCCGCTGA 6950 ||||||||| || |||||||||||||||||||||| |||| | || |||||||||| Sbjct 488 ACTGGGTGCTTTCCCTTGATCCGGCGCGCGAATTCACCAGGATTTATTCCGCTCCGCTGA 429 Query 6951 TGCTGCTGCCAGACCCTGACGCATTCGTCTCCGTCAAACTGGCATAACTTCCCCCAGTGG 7010 |||||||||| ||||||||| |||||||||||||| |||||| ||||||||||| |||| Sbjct 428 TGCTGCTGCCTGACCCTGACACATTCGTCTCCGTCGAACTGGTTTAACTTCCCCCCGTGG 369 Query 7011 CCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGTCGCCC 7070 ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| | Sbjct 368 CCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACCTAAAAAGAAAAGCTGATCGCTC 309 Query 7071 GCCTGAATGAACTTGGGACCCAGCTTAACCGCGAGGTCAGTACCAGCGGCACCATTCAGG 7130 |||||| ||| | || | | ||||||||||||||| | ||||||| ||||||| | Sbjct 308 GCCTGAGTGACATGGGCGCTTAACTTAACCGCGAGGTCGGCACCAGCGTGACCATTCCAG 249 Query 7131 AACTGACGATGCGTATTGCTGAGCTTGAAGAGGAACTGGATGGCAATGCCGGGTCAGTTG 7190 |||| || |||||||||||||| || || ||||| | ||| || ||||| || ||| Sbjct 248 AACTTACCATGCGTATTGCTGACCTGGACGAGGAGCCGGAGGGTGATGCCAATTCCATTG 189 Query 7191 ACGGTGAAAACGGCGTGCAGAATGCTTCCGACAGCA 7226 |||||||||||| | |||||||| ||||||||| Sbjct 188 ACGGTGAAAACGTATAGAAGAATGCTCCCGACAGCA 153 >seq41696 Length=2962 Score = 203 bits (224), Expect = 9e-48 Identities = 169/204 (83%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 7000 TCCCCCAGTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAA 7059 |||||||| ||| ||| | |||| | ||||||||||||||||||||| ||||||||||| Sbjct 209 TCCCCCAGCGGCTCTGCCAGGCCCCGGTTCTGGAGTATTTCCCATGACTGAAAAAGAAAA 150 Query 7060 GCTGGTCGCCCGCCTGAATGAACTTGGGACCCAGCTTAACCGCGAGGTCAGTACCAGCGG 7119 |||| | || ||||||||||| ||||| || ||| |||||||||||||| | ||||||| Sbjct 149 GCTGATTGCTCGCCTGAATGACCTTGGCACTCAGATTAACCGCGAGGTCCGCGCCAGCGG 90 Query 7120 CACCATTCAGGAACTGACGATGCGTATTGC-TGAGCTTGAAGAGGAACTGGATGGCAATG 7178 ||| ||||| ||||| |||||||||||||| ||| || ||| |||| |||||||| | | Sbjct 89 CACGATTCATGAACTTACGATGCGTATTGCTTGAACTGGAAAAGGAGCTGGATGGTTAAG 30 Query 7179 CC-GGGTCAGTTGACGGTGAAAAC 7201 || || |||||||||||||| Sbjct 29 CCAATTTCGATTGACGGTGAAAAC 6 >seq43227 Length=240 Score = 113 bits (124), Expect = 1e-20 Identities = 65/67 (97%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 6906 GGGATCCGGCGCGCGAATTCACCATGATTCAGTCAGCTCCGCTGATGCTGCTGCCAGACC 6965 ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 67 GGGATCCGGCGCGCGAATTCACCATGATTCATTCATCTCCGCTGATGCTGCTGCCAGACC 8 Query 6966 CTGACGC 6972 ||||||| Sbjct 7 CTGACGC 1 >seq41690 Length=2769 Score = 111 bits (122), Expect = 4e-20 Identities = 77/86 (90%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 6957 TGCCAGACCCTGACGCATTCGTCTCCGTCAAACTGGCATAACTTCCCCCAGTGGCCCTGT 7016 ||||| |||||||| ||||||||||||| |||||| ||||||| ||| ||||||||||| Sbjct 85 TGCCATACCCTGACTTATTCGTCTCCGTCTAACTGGTATAACTT-CCCAAGTGGCCCTGT 27 Query 7017 CGGGCCACCTTTCTGGAGTATTTCCC 7042 |||||||||||||||||||||||| Sbjct 26 GAGGCCACCTTTCTGGAGTATTTCCC 1 >seq45266 Length=3747 Score = 107 bits (118), Expect = 5e-19 Identities = 183/269 (68%), Gaps = 12/269 (4%) Strand=Plus/Plus Query 7136 ACGATGCGTATTGCTGAGCTTGAAGAGGAACTGGATGGCAATGCCGGGTCAGTTGACGGT 7195 ||||||||||||||||| | ||| |||| |||||||| ||||| | | ||| |||| Sbjct 3268 ACGATGCGTATTGCTGATGTGGAAAAGGAGCTGGATGGTGATGCCTGTTAGATTGTCGGT 3327 Query 7196 GAAAACGGCGTGCAGAATGC---------TTCCGACAGCANNNNNNNNNNNNNNNNNNAT 7246 |||||||| | ||||||| ||||||||||| || Sbjct 3328 GAAAACGGATAGAAGAATGCTCCCGACAGTTCCGACAGCACCGACAGCAGCGACAGCGAT 3387 Query 7247 GTTGCTAACGTGGCAAAAGTAAAAACGGAATCGGCCACAACGGGTGACCTGGTATCAGTA 7306 || | | | || |||||||||||| ||| | ||| || | ||||| ||| |||| | Sbjct 3388 GTAGATGGCACGGAAAAAGTAAAAACCGAAGTTGTCACTACAGATGACCGGGTGTCAGAA 3447 Query 7307 GAAACGCTGG-CCACCCTGC-ATATTGACGCTCTGCATGCCACGCGTAACGAGCCGGTAT 7364 || || |||| ||| ||| |||| ||| || || ||||| ||||||||| | || | Sbjct 3448 GACACACTGGTTTACCTTGCAATATCTGCGCGCTTCACGCCACACGTAACGAGTCTGTGT 3507 Query 7365 CTATCG-TAGAGCCTGGTGTGATTATCCG 7392 |||| | || |||||||| ||||||| Sbjct 3508 CTATTGTTATGCCCTGGTGTCGTTATCCG 3536 >seq41688 Length=3966 Score = 107 bits (118), Expect = 5e-19 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 6972 CATTCGTCTCCGTCAAACTGGCATAACTTCCCCCAGTGGCCCTGTCGGGCCACCTTTCTG 7031 ||||| |||||| | ||||||||||| ||||||||| ||||||||| ||||||||||||| Sbjct 94 CATTCTTCTCCGACTAACTGGCATAAATTCCCCCAGGGGCCCTGTCTGGCCACCTTTCTG 35 Query 7032 GAGTATTTCCCATGACAGAAAAAGAAAAGCTG 7063 || |||||| ||| |||| ||| |||| ||| Sbjct 34 GATTATTTCTCATCTCAGAGAAAAAAAATCTG 3 >seq58212 Length=770 Score = 95.1 bits (104), Expect = 3e-15 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 6916 GCGCGAATTCACCATGATTCAGTCAGCTCCGCTGATGCTGCTGCCAGACCCTGACGC 6972 ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 57 GCGCGAATTCACCATGATTCATTCCGCTCCGCTGATGCTGCTGCCAGACCCTGACGC 1 >seq40944 Length=742 Score = 87.8 bits (96), Expect = 5e-13 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 6917 CGCGAATTCACCATGATTCAGTCAGCTCCGCTGATGCTGCTGCCAGACCCTGACGC 6972 ||| |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 56 CGCTAATTCACCATGATTCAGTCAGCTCCGCTGATGCTGCTGCCGAACCCTGACGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141767718354636