Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2502 100 2e-16 >seq2502 Length=682766 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||||||||| ||||||||||||||||| ||| || ||| || Sbjct 412569 AATGCAGATCTTTGTAAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTGGAGCCCAG 412628 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || ||||| ||| ||| ||||| || || | || || || Sbjct 412629 TGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCA 412688 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| | |||||||| || ||||| |||||||| | || || | || || || Sbjct 412689 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGTCGGACCTTGTCTGACTACAA 412748 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| || |||||||| ||||||||| |||| Sbjct 412749 CATCCAGAAAGAATCCACTCTGCACTTGGT 412778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425064201508026