Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3 116 2e-20 seq2502 87.8 1e-11 seq2091 87.8 1e-11 seq280 87.8 1e-11 >seq3 Length=4708640 Score = 116 bits (128), Expect = 2e-20 Identities = 308/461 (67%), Gaps = 12/461 (3%) Strand=Plus/Plus Query 475367 ACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCATGGT 475424 |||||||||||| | || | ||||| |||||||||||||| || | || |||| | Sbjct 2000361 ACAGCTGGAGATACCCACTTGGGTGGAGAAGATTTTGATAACAGGATGGTGAATCAC--T 2000418 Query 475425 GTGTTGAAGATTTCAAGAGGAAAAATAA--AGTTGATCTTTCAACATCTGCTAAAGCATT 475482 | ||| || |||||| | ||| |||| || ||| | | | | | || | Sbjct 2000419 TTATTGCTGAGTTCAAGCGCAAACATAAGAAGGACATCACTGAGAACAAG--AGGGCTGT 2000476 Query 475483 AAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAAC 475542 | || || | ||||||||||||||||| || || |||| || || || || | Sbjct 2000477 TCGTCGCCTCCGTACTGCTTGTGAACGTGCAAAACGTACTCTGTCCTCCAGCACCCAGGC 2000536 Query 475543 TACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGC 475602 | | | || |||| ||||| | ||||||||| || | | |||| ||||| | || Sbjct 2000537 CAGTATCGAGATTGACTCTCTCTATGAAGGAATCGACTTTTATACCTCCATTACCCGTGC 2000596 Query 475603 TAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGT 475662 | ||||||||| | | |||| ||||| | || | || || || || ||| Sbjct 2000597 TCGATTTGAAGAATTGAATGCTGACCTCTTCCGTGGCACTCTGGACCCTGTGGAGAAAGC 2000656 Query 475663 TCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTC 475722 || || ||| | || || ||||| || || | ||||| |||||||| || || || || Sbjct 2000657 CCTGAGGGATGCCAAGCTAGACAAGTCTCAGATACATGACATTGTTCTCGTGGGCGGCTC 2000716 Query 475723 AACAAGAATTCC-AAAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTA 475780 || | ||||| || | | ||| || ||| |||| || | || ||||| ||| | || Sbjct 2000717 TACCCGTATTCCTAAGATTCAGA-AACTGC-TTCAGGATTTCTTCAATGGAAAAGAATTG 2000774 Query 475781 AATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 || | || | || |||||||| |||||||| ||||| || Sbjct 2000775 AACAAGAGCATTAACCCTGATGAGGCTGTTGCTTATGGTGC 2000815 Score = 95.1 bits (104), Expect = 8e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||| |||||||| ||| | || |||||||| ||||| || ||||||||||| ||||| Sbjct 2001506 GGTATACCTCCTGCACCCCGTGGTGTTCCTCAGATTGAGGTCACTTTTGATATAGATGCT 2001565 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 |||||||| || |||||| ||||| ||||| Sbjct 2001566 AATGGTATCCTCAATGTTTCTGCTGTGGATAA 2001597 >seq2502 Length=682766 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || || || ||||||||||| | | || || ||||||||||| |||||||| Sbjct 414185 ATCTTCCAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTT 414126 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||| ||||| ||||| || || || ||| || | ||||||||| || Sbjct 414125 GTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCTACTTCAAGGGTGAT 414066 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| ||||| || || Sbjct 414065 TGTCTTCCCCGTCAGGGTCTTCACGAAGATCTG 414033 >seq2091 Length=1438649 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| ||||||| ||||| ||||| |||||| | || || |||||||||||||||| Sbjct 371699 ATGCAGTTGTTACTGTGCCAGCCTATTTCAATGATGCCCAGCGCCAAGCAACTAAAGATG 371640 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840 | |||| ||||| || || ||||| | | || || ||||| || Sbjct 371639 CTGGAACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 371594 >seq280 Length=2099476 Score = 87.8 bits (96), Expect = 1e-11 Identities = 283/434 (65%), Gaps = 14/434 (3%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||||||||||| ||| | | ||||| ||||| || | ||| || || Sbjct 1687322 ACTGCTTGTGAACTTGCAAGACATGCTCTATCTTC-------CAGGCCACTAGTGGGATT 1687270 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 ||||||||| ||||||||| | | |||| | |||| | | |||||||||| Sbjct 1687269 AATTCTCTTTATGAAGGAATCAACTTCTATACCTTCGTTACCTGCTCCTAATTTGAAGAA 1687210 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| || || | || | || || || || ||| || || ||| | Sbjct 1687209 CTGAATGCTGACCTGTTCTGTGGCACTCTGGACCCTGTGGAGAAAGCCCTTAGGGATGCC 1687150 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 || | ||||| ||||| ||||||| ||||| || || || ||||| || ||| | Sbjct 1687149 AACATAGACAAGTCACAGATCCATGACATTGTCCTGGTGGGCGGTTCTACCTCTATTGCC 1687090 Query 475736 AAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794 || || ||||| ||||| || | || ||||| ||| | ||||| | || | || Sbjct 1687089 AAGAT-TCAGAAACTTTTTCAAGATTTATTCAATGGGAAAGACTTAAAGAAGAGCATGAA 1687031 Query 475795 TCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGT--CAA 475852 | |||| || |||| ||||| || ||||||| ||||| || ||| | ||| || Sbjct 1687030 CTCCAATGAGACTATTGCTTATGGTGCATCTGTCCAGGCAGCCATCTTACCTGGTGCAAA 1686971 Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912 || || | ||||| || || | | || | || || ||||| ||||| | ||| | Sbjct 1686970 TCTGA--AAAAACTCAA-GATTTGCTGCTCTTGGATGTCACTCCTCTTTCCCTTGGTATG 1686914 Query 475913 GAAACAGTTGGAGG 475926 ||||| | ||| || Sbjct 1686913 GAAACTGCTGGTGG 1686900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265361265592712